3ZPMA

Solution structure of latherin
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
211
structure length
211
Chain Sequence
AMAQQIPPEVSSQITDALTQGLLDGNFLSLLNAINLEGLLNTILDQVTGLLNILVGPLLGPSDAEIKLQDTRLLQLSLEFSPDSKGIDIWIPLELSVYLKLLILEPLTLYVRTDIRVQLRLESDEDGKYRLAFGHCSLLPRAIELQSGNPLSLPVNAVLGTIENALGNFITEDLGAGLCPTLNSLVSNLDLQLVNNLINLILDRANVDLSV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Surfactant protein
molecule keywords LATHERIN
publication title The structure of latherin, a surfactant allergen protein from horse sweat and saliva.
pubmed doi rcsb
source organism Equus caballus
total genus 42
structure length 211
sequence length 211
ec nomenclature
pdb deposition date 2013-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01273 LBP_BPI_CETP LBP / BPI / CETP family, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.15.10.10 Alpha Beta Super Roll Bactericidal permeability-increasing protein; domain 1 Bactericidal permeability-increasing protein; domain 1 3zpmA00
1EWFA 4KGOA 4EWSA 5I7LA 5I7KA 3ZPMA 5I7JA 1BP1A 4KGHA 2OBDA 4F2AA 4M4DA
chains in the Genus database with same CATH superfamily
3A1ZA 4KGOA 4G0SA 5I7LA 5I7JA 2RCKA 2OBDA 3N72A 3UV1A 1USVB 3ZPMA 2RQFA 3AOTA 4EWSA 5I7KA 3H4ZA 1BP1A 4KGHA 3L6IA 3AOSA 1EWFA 1USUB 3E8TA 3E8WA 4F2AA 4M4DA
chains in the Genus database with same CATH topology
3A1ZA 4KGOA 4G0SA 5I7LA 5I7JA 2RCKA 2OBDA 3N72A 3UV1A 1USVB 3ZPMA 2RQFA 3AOTA 4EWSA 5I7KA 3H4ZA 1BP1A 4KGHA 3L6IA 3AOSA 1EWFA 1USUB 3E8TA 3E8WA 4F2AA 4M4DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EWF A;  4KGO A;  4EWS A;  5I7L A;  5I7K A;  3ZPM A;  5I7J A;  1BP1 A;  4KGH A;  2OBD A;  4F2A A;  4M4D A; 
#chains in the Genus database with same CATH topology
 3A1Z A;  4KGO A;  4G0S A;  5I7L A;  5I7J A;  2RCK A;  2OBD A;  3N72 A;  3UV1 A;  1USV B;  3ZPM A;  2RQF A;  3AOT A;  4EWS A;  5I7K A;  3H4Z A;  1BP1 A;  4KGH A;  3L6I A;  3AOS A;  1EWF A;  1USU B;  3E8T A;  3E8W A;  4F2A A;  4M4D A; 
#chains in the Genus database with same CATH homology
 3A1Z A;  4KGO A;  4G0S A;  5I7L A;  5I7J A;  2RCK A;  2OBD A;  3N72 A;  3UV1 A;  1USV B;  3ZPM A;  2RQF A;  3AOT A;  4EWS A;  5I7K A;  3H4Z A;  1BP1 A;  4KGH A;  3L6I A;  3AOS A;  1EWF A;  1USU B;  3E8T A;  3E8W A;  4F2A A;  4M4D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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