4H4AA

Crystal structure of the c-terminal domain of drosophila melanogaster zucchini
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
169
structure length
151
Chain Sequence
GPMGSLRNVAKIVEQIDRAVYSIDLAIYTFTSLFLADSIKRALQRGVIIRIISDGEMVYSKGSQISMLAQLGVPVRVPITLMHNKFCIIDGFERVEEIRLLRKRPCYSIVISGSVNWTGNWENCIITADDKLTATFQAEFQRMWRAQIQLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the primary piRNA biogenesis factor Zucchini reveals similarity to the bacterial PLD endonuclease Nuc.
pubmed doi rcsb
molecule tags Hydrolase
source organism Drosophila melanogaster
molecule keywords Mitochondrial cardiolipin hydrolase
total genus 45
structure length 151
sequence length 169
ec nomenclature ec 3.1.4.-:
pdb deposition date 2012-09-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13091 PLDc_2 PLD-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.870.10 Alpha Beta 2-Layer Sandwich Endonuclease; Chain A Endonuclease Chain A 4h4aA00
1JY1A 1V0WA 3SQ5A 1RGTA 1MU7A 1QZQA 3SQ7A 5BOXA 1RFFA 4URJA 3SQ8A 1RG1A 3QPHA 1V0UA 4GELA 4GGJA 5BQTA 1F0IA 1RGUA 1V0RA 1RFIA 1NOPA 1MU9A 4RCTA 2O8RA 4H4AA 1RG2A 5BPIA 2ZE4A 1Q32A 1BYRA 1RH0A 1V0TA 4GENA 1XDPA 2F5TX 2C1LA 1V0VA 4GGKA 2ZE9A 4GEMA 3SQ3A 5LZKA 1XDOA 3HSIA 1V0YA 5BPDA 1V0SA 1BYSA
chains in the Genus database with same CATH superfamily
1JY1A 1V0WA 3SQ5A 1RGTA 1MU7A 1QZQA 1CW0A 3SQ7A 5BPDA 1VSRA 2YMBA 1ODGA 5BOXA 1RFFA 4URJA 3SQ8A 4A5ZA 1RG1A 3QPHA 1V0UA 4GELA 4GGJA 5BQTA 1F0IA 1RGUA 1V0RA 1RFIA 1NOPA 1MU9A 4RCTA 2O8RA 4H4AA 1RG2A 5BPIA 2ZE4A 1Q32A 1BYRA 1RH0A 1V0TA 3HRLA 4GENA 1XDPA 2F5TX 2C1LA 1V0VA 4GGKA 2ZE9A 4GEMA 3SQ3A 5LZKA 1XDOA 3HSIA 1V0YA 3R3PA 1V0SA 1BYSA
chains in the Genus database with same CATH topology
1JY1A 1V0WA 3SQ5A 1RGTA 1MU7A 1QZQA 3SQ7A 5BOXA 1RFFA 4URJA 3SQ8A 1RG1A 3QPHA 1V0UA 4GELA 4GGJA 5BQTA 1F0IA 1RGUA 1V0RA 1RFIA 1NOPA 1MU9A 4RCTA 2O8RA 4H4AA 1RG2A 5BPIA 2ZE4A 1Q32A 1BYRA 1RH0A 1V0TA 4GENA 1XDPA 2F5TX 2C1LA 1V0VA 4GGKA 2ZE9A 4GEMA 3SQ3A 5LZKA 1XDOA 3HSIA 1V0YA 5BPDA 1V0SA 1BYSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JY1 A;  1V0W A;  3SQ5 A;  1RGT A;  1MU7 A;  1QZQ A;  3SQ7 A;  5BOX A;  1RFF A;  4URJ A;  3SQ8 A;  1RG1 A;  3QPH A;  1V0U A;  4GEL A;  4GGJ A;  5BQT A;  1F0I A;  1RGU A;  1V0R A;  1RFI A;  1NOP A;  1MU9 A;  4RCT A;  2O8R A;  4H4A A;  1RG2 A;  5BPI A;  2ZE4 A;  1Q32 A;  1BYR A;  1RH0 A;  1V0T A;  4GEN A;  1XDP A;  2F5T X;  2C1L A;  1V0V A;  4GGK A;  2ZE9 A;  4GEM A;  3SQ3 A;  5LZK A;  1XDO A;  3HSI A;  1V0Y A;  5BPD A;  1V0S A;  1BYS A; 
#chains in the Genus database with same CATH topology
 1JY1 A;  1V0W A;  3SQ5 A;  1RGT A;  1MU7 A;  1QZQ A;  1CW0 A;  3SQ7 A;  5BPD A;  1VSR A;  2YMB A;  1ODG A;  5BOX A;  1RFF A;  4URJ A;  3SQ8 A;  4A5Z A;  1RG1 A;  3QPH A;  1V0U A;  4GEL A;  4GGJ A;  5BQT A;  1F0I A;  1RGU A;  1V0R A;  1RFI A;  1NOP A;  1MU9 A;  4RCT A;  2O8R A;  4H4A A;  1RG2 A;  5BPI A;  2ZE4 A;  1Q32 A;  1BYR A;  1RH0 A;  1V0T A;  3HRL A;  4GEN A;  1XDP A;  2F5T X;  2C1L A;  1V0V A;  4GGK A;  2ZE9 A;  4GEM A;  3SQ3 A;  5LZK A;  1XDO A;  3HSI A;  1V0Y A;  3R3P A;  1V0S A;  1BYS A; 
#chains in the Genus database with same CATH homology
 1JY1 A;  1V0W A;  3SQ5 A;  1RGT A;  1MU7 A;  1QZQ A;  3SQ7 A;  5BOX A;  1RFF A;  4URJ A;  3SQ8 A;  1RG1 A;  3QPH A;  1V0U A;  4GEL A;  4GGJ A;  5BQT A;  1F0I A;  1RGU A;  1V0R A;  1RFI A;  1NOP A;  1MU9 A;  4RCT A;  2O8R A;  4H4A A;  1RG2 A;  5BPI A;  2ZE4 A;  1Q32 A;  1BYR A;  1RH0 A;  1V0T A;  4GEN A;  1XDP A;  2F5T X;  2C1L A;  1V0V A;  4GGK A;  2ZE9 A;  4GEM A;  3SQ3 A;  5LZK A;  1XDO A;  3HSI A;  1V0Y A;  5BPD A;  1V0S A;  1BYS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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