4K6LG

Structure of typhoid toxin
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
224
structure length
224
Chain Sequence
VDFVYRVDSTPPDVIFRDGFSLLGYNRNFQQFISGRSCSGGSSDSRYIATTSSVNQTYAIARAYYSRSTFKGNLYRYQIRADNNFYSLLPSITYLETQGGHFNAYEKTMMRLQREYVSTLSILPENIQKAVALVYDSATGLVKDGVSTMNASYLGLSTTSNPGVIPFLPEPQTYTQQRIDAFGPLISSCFSIGSVCHSHRGQRADVYNMSFYDARPVIELILSK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and function of the Salmonella Typhi chimaeric A(2)B(5) typhoid toxin.
pubmed doi rcsb
molecule tags Toxin
source organism Salmonella enterica subsp. enterica serovar typhi
molecule keywords Putative pertussis-like toxin subunit
total genus 74
structure length 224
sequence length 224
ec nomenclature ec 2.4.2.-:
pdb deposition date 2013-04-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.210.10 Alpha Beta Alpha-Beta Complex Heat-Labile Enterotoxin; Chain A Heat-Labile Enterotoxin, subunit A 4k6lG00
2VSEA 1LTGA 1S5FA 1HTLA 2VSAA 1LTSA 1S5EA 2CB4A 1LTBA 1S5DA 1TIIA 4Z9CA 1LT4A 2A5FB 2A5GB 1PTOA 2A5DB 1S5BA 1LTTA 1LTAA 1LTIA 1LT3A 2CB6A 1BCPA 1PRTA 1S5CA 1XTCA 4K6LG
chains in the Genus database with same CATH superfamily
2VSEA 1LTGA 1S5FA 1HTLA 2VSAA 1LTSA 1S5EA 2CB4A 1LTBA 1S5DA 1TIIA 4Z9CA 1LT4A 2A5FB 2A5GB 1PTOA 2A5DB 1S5BA 1LTTA 1LTAA 1LTIA 1LT3A 2CB6A 1BCPA 1PRTA 1S5CA 1XTCA 4K6LG
chains in the Genus database with same CATH topology
2VSEA 1LTGA 1S5FA 1HTLA 2VSAA 1LTSA 1S5EA 2CB4A 1LTBA 1S5DA 1TIIA 4Z9CA 1LT4A 2A5FB 2A5GB 1PTOA 2A5DB 1S5BA 1LTTA 1LTAA 1LTIA 1LT3A 2CB6A 1BCPA 1PRTA 1S5CA 1XTCA 4K6LG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VSE A;  1LTG A;  1S5F A;  1HTL A;  2VSA A;  1LTS A;  1S5E A;  2CB4 A;  1LTB A;  1S5D A;  1TII A;  4Z9C A;  1LT4 A;  2A5F B;  2A5G B;  1PTO A;  2A5D B;  1S5B A;  1LTT A;  1LTA A;  1LTI A;  1LT3 A;  2CB6 A;  1BCP A;  1PRT A;  1S5C A;  1XTC A;  4K6L G; 
#chains in the Genus database with same CATH topology
 2VSE A;  1LTG A;  1S5F A;  1HTL A;  2VSA A;  1LTS A;  1S5E A;  2CB4 A;  1LTB A;  1S5D A;  1TII A;  4Z9C A;  1LT4 A;  2A5F B;  2A5G B;  1PTO A;  2A5D B;  1S5B A;  1LTT A;  1LTA A;  1LTI A;  1LT3 A;  2CB6 A;  1BCP A;  1PRT A;  1S5C A;  1XTC A;  4K6L G; 
#chains in the Genus database with same CATH homology
 2VSE A;  1LTG A;  1S5F A;  1HTL A;  2VSA A;  1LTS A;  1S5E A;  2CB4 A;  1LTB A;  1S5D A;  1TII A;  4Z9C A;  1LT4 A;  2A5F B;  2A5G B;  1PTO A;  2A5D B;  1S5B A;  1LTT A;  1LTA A;  1LTI A;  1LT3 A;  2CB6 A;  1BCP A;  1PRT A;  1S5C A;  1XTC A;  4K6L G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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