4LO5A

Ha70-alpha2,3-sialc
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
170
structure length
170
Chain Sequence
SDTIDLADGNYVVRRGDGWILSRQNQILGGSVISNGSTGIVGDLRVNDNAIPYYYPTPSFNEEYIKNNIQTVFTNFTEANQIPIGFEFSKTAPSNKNLYMYLQYTYIRYEIIKVLQHEIIERAVLYVPSLGYVKSIEFNPGEKINKDFYFLTNDKCILNEQFLYKKILET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of a Bimodular Botulinum Neurotoxin Complex Provides Insights into Its Oral Toxicity.
pubmed doi rcsb
molecule tags Protein transport
source organism Clostridium botulinum
molecule keywords HA-70
total genus 38
structure length 170
sequence length 170
ec nomenclature
pdb deposition date 2013-07-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03505 Clenterotox Clostridium enterotoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1750.20 Alpha Beta 2-Layer Sandwich hemolytic lectin cel-iii, domain 3 hemolytic lectin cel-iii, domain 3 4lo5A00
3AM2A 4EN8B 4P5HA 4EN9A 3WINE 2ZOEA 4LO5A 3WIND 2YHJA 4EN6B 3ZIXA 4EN8A 4LO6B 4EN7B 2ZS6B 4LO4B 3ZIWA 2XH6A 2ZOEB 4EN9B 4EN6A 4LO5B 4EN7A 4LO6A 4LO4A 2ZS6A
chains in the Genus database with same CATH superfamily
3AM2A 4EN8B 4P5HA 4EN9A 3WINE 2ZOEA 4LO5A 3WIND 2YHJA 3W9TA 4EN6B 2Z49A 1VCLA 3ZIXA 4EN8A 4LO6B 4EN7B 2ZS6B 4LO4B 3ZIWA 2XH6A 2ZOEB 4EN9B 4EN6A 4LO5B 2Z48A 4EN7A 4LO6A 4LO4A 2ZS6A
chains in the Genus database with same CATH topology
3AM2A 4EN8B 4P5HA 4EN9A 3WINE 2ZOEA 4LO5A 3WIND 2YHJA 4EN6B 3ZIXA 4EN8A 4LO6B 4EN7B 2ZS6B 4LO4B 3ZIWA 2XH6A 2ZOEB 4EN9B 4EN6A 4LO5B 4EN7A 4LO6A 4LO4A 2ZS6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AM2 A;  4EN8 B;  4P5H A;  4EN9 A;  3WIN E;  2ZOE A;  4LO5 A;  3WIN D;  2YHJ A;  4EN6 B;  3ZIX A;  4EN8 A;  4LO6 B;  4EN7 B;  2ZS6 B;  4LO4 B;  3ZIW A;  2XH6 A;  2ZOE B;  4EN9 B;  4EN6 A;  4LO5 B;  4EN7 A;  4LO6 A;  4LO4 A;  2ZS6 A; 
#chains in the Genus database with same CATH topology
 3AM2 A;  4EN8 B;  4P5H A;  4EN9 A;  3WIN E;  2ZOE A;  4LO5 A;  3WIN D;  2YHJ A;  3W9T A;  4EN6 B;  2Z49 A;  1VCL A;  3ZIX A;  4EN8 A;  4LO6 B;  4EN7 B;  2ZS6 B;  4LO4 B;  3ZIW A;  2XH6 A;  2ZOE B;  4EN9 B;  4EN6 A;  4LO5 B;  2Z48 A;  4EN7 A;  4LO6 A;  4LO4 A;  2ZS6 A; 
#chains in the Genus database with same CATH homology
 3AM2 A;  4EN8 B;  4P5H A;  4EN9 A;  3WIN E;  2ZOE A;  4LO5 A;  3WIN D;  2YHJ A;  4EN6 B;  3ZIX A;  4EN8 A;  4LO6 B;  4EN7 B;  2ZS6 B;  4LO4 B;  3ZIW A;  2XH6 A;  2ZOE B;  4EN9 B;  4EN6 A;  4LO5 B;  4EN7 A;  4LO6 A;  4LO4 A;  2ZS6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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