4P3EB

Structure of the human srp s domain
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
105
structure length
105
Chain Sequence
DRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title SRP RNA remodeling by SRP68 explains its role in protein translocation.
pubmed doi rcsb
molecule tags Rna binding protein/rna
source organism Homo sapiens
molecule keywords SRP RNA (124-mer)
total genus 23
structure length 105
sequence length 105
ec nomenclature
pdb deposition date 2014-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01922 SRP19 SRP19 protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.56.30 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase; Chain B, domain 1 Signal recognition particle, SRP19-like subunit 4p3eB00
5M73B 1LNGA 1KVNA 4XCOA 1KVVA 3NDBA 3DLVA 3KTWA 1JIDA 1MFQB 3DLUA 3KTVB 1L9AA 2V3CA 4P3EB
chains in the Genus database with same CATH superfamily
4P74A 1KVNA 3AXSA 4P73A 4XCOA 2LQ3A 4P71A 1MFQB 2AMCB 2AKWB 2IY5B 4DDWA 2ALYB 2RHSB 1KVVA 1JJCB 1B7YB 1L9AA 4P75A 1PYSB 3AXTA 1B70B 4DDVA 1ND9A 3TEHB 2RHQB 3NDBA 3DLVA 3HFZB 3DLUA 2HG7A 3KTVB 2CXIA 2EJUA 4DDUA 4P3EB 5M73B 1LNGA 1EIYB 3PCOB 4IOHA 4P72A 3L4GB 3KTWA 1JIDA 3USHA 4DDTA 2EJTA 2DULA 2YTZA 4TVAB 2V3CA
chains in the Genus database with same CATH topology
5M73B 1LNGA 1KVNA 4XCOA 1KVVA 3NDBA 3DLVA 3KTWA 1JIDA 1MFQB 3DLUA 3KTVB 1L9AA 2V3CA 4P3EB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5M73 B;  1LNG A;  1KVN A;  4XCO A;  1KVV A;  3NDB A;  3DLV A;  3KTW A;  1JID A;  1MFQ B;  3DLU A;  3KTV B;  1L9A A;  2V3C A;  4P3E B; 
#chains in the Genus database with same CATH topology
 4P74 A;  1KVN A;  3AXS A;  4P73 A;  4XCO A;  2LQ3 A;  4P71 A;  1MFQ B;  2AMC B;  2AKW B;  2IY5 B;  4DDW A;  2ALY B;  2RHS B;  1KVV A;  1JJC B;  1B7Y B;  1L9A A;  4P75 A;  1PYS B;  3AXT A;  1B70 B;  4DDV A;  1ND9 A;  3TEH B;  2RHQ B;  3NDB A;  3DLV A;  3HFZ B;  3DLU A;  2HG7 A;  3KTV B;  2CXI A;  2EJU A;  4DDU A;  4P3E B;  5M73 B;  1LNG A;  1EIY B;  3PCO B;  4IOH A;  4P72 A;  3L4G B;  3KTW A;  1JID A;  3USH A;  4DDT A;  2EJT A;  2DUL A;  2YTZ A;  4TVA B;  2V3C A; 
#chains in the Genus database with same CATH homology
 5M73 B;  1LNG A;  1KVN A;  4XCO A;  1KVV A;  3NDB A;  3DLV A;  3KTW A;  1JID A;  1MFQ B;  3DLU A;  3KTV B;  1L9A A;  2V3C A;  4P3E B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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