4P3EB

Structure of the human srp s domain
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
105
structure length
105
Chain Sequence
DRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title SRP RNA remodeling by SRP68 explains its role in protein translocation.
pubmed doi rcsb
molecule tags Rna binding protein/rna
source organism Homo sapiens
molecule keywords SRP RNA (124-mer)
total genus 23
structure length 105
sequence length 105
ec nomenclature
pdb deposition date 2014-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01922 SRP19 SRP19 protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.56.30 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase; Chain B, domain 1 Signal recognition particle, SRP19-like subunit 4p3eB00
3KTVB 1KVVA 1L9AA 2V3CA 1KVNA 3DLUA 1LNGA 4XCOA 1MFQB 3DLVA 1JIDA 3NDBA 3KTWA 5M73B 4P3EB
chains in the Genus database with same CATH superfamily
3AXTA 1B7YB 2RHQB 2V3CA 3DLUA 4DDUA 1B70B 1EIYB 1JIDA 4P73A 3NDBA 1JJCB 2YTZA 2AKWB 2RHSB 2IY5B 1KVVA 3PCOB 3AXSA 4DDVA 4P71A 1ND9A 1MFQB 4TVAB 1PYSB 5M73B 4P3EB 2ALYB 4DDTA 2HG7A 4P75A 4IOHA 1KVNA 2EJUA 4P74A 3HFZB 3KTWA 1L9AA 2LQ3A 3TEHB 3USHA 3KTVB 2EJTA 4DDWA 4P72A 1LNGA 4XCOA 2AMCB 2CXIA 3DLVA 2DULA 3L4GB
chains in the Genus database with same CATH topology
3KTVB 1KVVA 1L9AA 2V3CA 1KVNA 3DLUA 1LNGA 4XCOA 1MFQB 3DLVA 1JIDA 3NDBA 3KTWA 5M73B 4P3EB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KTV B;  1KVV A;  1L9A A;  2V3C A;  1KVN A;  3DLU A;  1LNG A;  4XCO A;  1MFQ B;  3DLV A;  1JID A;  3NDB A;  3KTW A;  5M73 B;  4P3E B; 
#chains in the Genus database with same CATH topology
 3AXT A;  1B7Y B;  2RHQ B;  2V3C A;  3DLU A;  4DDU A;  1B70 B;  1EIY B;  1JID A;  4P73 A;  3NDB A;  1JJC B;  2YTZ A;  2AKW B;  2RHS B;  2IY5 B;  1KVV A;  3PCO B;  3AXS A;  4DDV A;  4P71 A;  1ND9 A;  1MFQ B;  4TVA B;  1PYS B;  5M73 B;  4P3E B;  2ALY B;  4DDT A;  2HG7 A;  4P75 A;  4IOH A;  1KVN A;  2EJU A;  4P74 A;  3HFZ B;  3KTW A;  1L9A A;  2LQ3 A;  3TEH B;  3USH A;  3KTV B;  2EJT A;  4DDW A;  4P72 A;  1LNG A;  4XCO A;  2AMC B;  2CXI A;  3DLV A;  2DUL A;  3L4G B; 
#chains in the Genus database with same CATH homology
 3KTV B;  1KVV A;  1L9A A;  2V3C A;  1KVN A;  3DLU A;  1LNG A;  4XCO A;  1MFQ B;  3DLV A;  1JID A;  3NDB A;  3KTW A;  5M73 B;  4P3E B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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