4XCOA

Signal-sequence induced conformational changes in the signal recognition particle
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
85
structure length
85
Chain Sequence
MIIWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQHWEICGCVEVDYKGNKLQLLKEICKIIKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Signal-sequence induced conformational changes in the signal recognition particle.
pubmed doi rcsb
molecule tags Rna binding protein
source organism Methanocaldococcus jannaschii
molecule keywords RNA
total genus 19
structure length 85
sequence length 85
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-12-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01922 SRP19 SRP19 protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.56.30 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase; Chain B, domain 1 Signal recognition particle, SRP19-like subunit 4xcoA00
3DLVA 4P3EB 1KVVA 3KTVB 2V3CA 3DLUA 1LNGA 4XCOA 1JIDA 3NDBA 1MFQB 1L9AA 5M73B 3KTWA 1KVNA
chains in the Genus database with same CATH superfamily
2AKWB 4P3EB 3HFZB 3KTVB 1B70B 1JIDA 4P73A 1PYSB 4P74A 3KTWA 3AXSA 4DDUA 2ALYB 2V3CA 2LQ3A 4DDVA 1ND9A 4XCOA 1MFQB 4P72A 4DDTA 2RHSB 2HG7A 2AMCB 3USHA 5M73B 2IY5B 1JJCB 3PCOB 4P75A 1KVVA 4IOHA 3DLUA 1LNGA 3NDBA 3TEHB 1L9AA 2RHQB 2CXIA 1KVNA 2YTZA 2EJTA 4TVAB 3DLVA 2DULA 4P71A 4DDWA 1EIYB 3L4GB 2EJUA 1B7YB 3AXTA
chains in the Genus database with same CATH topology
3DLVA 4P3EB 1KVVA 3KTVB 2V3CA 3DLUA 1LNGA 4XCOA 1JIDA 3NDBA 1MFQB 1L9AA 5M73B 3KTWA 1KVNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DLV A;  4P3E B;  1KVV A;  3KTV B;  2V3C A;  3DLU A;  1LNG A;  4XCO A;  1JID A;  3NDB A;  1MFQ B;  1L9A A;  5M73 B;  3KTW A;  1KVN A; 
#chains in the Genus database with same CATH topology
 2AKW B;  4P3E B;  3HFZ B;  3KTV B;  1B70 B;  1JID A;  4P73 A;  1PYS B;  4P74 A;  3KTW A;  3AXS A;  4DDU A;  2ALY B;  2V3C A;  2LQ3 A;  4DDV A;  1ND9 A;  4XCO A;  1MFQ B;  4P72 A;  4DDT A;  2RHS B;  2HG7 A;  2AMC B;  3USH A;  5M73 B;  2IY5 B;  1JJC B;  3PCO B;  4P75 A;  1KVV A;  4IOH A;  3DLU A;  1LNG A;  3NDB A;  3TEH B;  1L9A A;  2RHQ B;  2CXI A;  1KVN A;  2YTZ A;  2EJT A;  4TVA B;  3DLV A;  2DUL A;  4P71 A;  4DDW A;  1EIY B;  3L4G B;  2EJU A;  1B7Y B;  3AXT A; 
#chains in the Genus database with same CATH homology
 3DLV A;  4P3E B;  1KVV A;  3KTV B;  2V3C A;  3DLU A;  1LNG A;  4XCO A;  1JID A;  3NDB A;  1MFQ B;  1L9A A;  5M73 B;  3KTW A;  1KVN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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