4XCOA

Signal-sequence induced conformational changes in the signal recognition particle
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
85
structure length
85
Chain Sequence
MIIWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQHWEICGCVEVDYKGNKLQLLKEICKIIKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Signal-sequence induced conformational changes in the signal recognition particle.
pubmed doi rcsb
molecule tags Rna binding protein
source organism Methanocaldococcus jannaschii
molecule keywords RNA
total genus 19
structure length 85
sequence length 85
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-12-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01922 SRP19 SRP19 protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.56.30 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase; Chain B, domain 1 Signal recognition particle, SRP19-like subunit 4xcoA00
1KVNA 3DLUA 1KVVA 4P3EB 3KTWA 1MFQB 5M73B 1L9AA 3KTVB 2V3CA 3DLVA 1LNGA 1JIDA 3NDBA 4XCOA
chains in the Genus database with same CATH superfamily
1PYSB 3L4GB 4P3EB 4P71A 2CXIA 5M73B 4P74A 3KTVB 2V3CA 2YTZA 3DLUA 4DDTA 2IY5B 1JJCB 4DDUA 4TVAB 1EIYB 4P72A 2HG7A 4DDWA 2AMCB 2ALYB 2AKWB 3HFZB 1KVNA 3AXSA 2RHQB 2EJTA 3NDBA 3TEHB 1JIDA 4IOHA 4XCOA 1B7YB 1B70B 1ND9A 1KVVA 4P75A 4P73A 3KTWA 1MFQB 2DULA 2RHSB 3USHA 1L9AA 3AXTA 2EJUA 2LQ3A 4DDVA 3DLVA 1LNGA 3PCOB
chains in the Genus database with same CATH topology
1KVNA 3DLUA 1KVVA 4P3EB 3KTWA 1MFQB 5M73B 1L9AA 3KTVB 2V3CA 3DLVA 1LNGA 1JIDA 3NDBA 4XCOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KVN A;  3DLU A;  1KVV A;  4P3E B;  3KTW A;  1MFQ B;  5M73 B;  1L9A A;  3KTV B;  2V3C A;  3DLV A;  1LNG A;  1JID A;  3NDB A;  4XCO A; 
#chains in the Genus database with same CATH topology
 1PYS B;  3L4G B;  4P3E B;  4P71 A;  2CXI A;  5M73 B;  4P74 A;  3KTV B;  2V3C A;  2YTZ A;  3DLU A;  4DDT A;  2IY5 B;  1JJC B;  4DDU A;  4TVA B;  1EIY B;  4P72 A;  2HG7 A;  4DDW A;  2AMC B;  2ALY B;  2AKW B;  3HFZ B;  1KVN A;  3AXS A;  2RHQ B;  2EJT A;  3NDB A;  3TEH B;  1JID A;  4IOH A;  4XCO A;  1B7Y B;  1B70 B;  1ND9 A;  1KVV A;  4P75 A;  4P73 A;  3KTW A;  1MFQ B;  2DUL A;  2RHS B;  3USH A;  1L9A A;  3AXT A;  2EJU A;  2LQ3 A;  4DDV A;  3DLV A;  1LNG A;  3PCO B; 
#chains in the Genus database with same CATH homology
 1KVN A;  3DLU A;  1KVV A;  4P3E B;  3KTW A;  1MFQ B;  5M73 B;  1L9A A;  3KTV B;  2V3C A;  3DLV A;  1LNG A;  1JID A;  3NDB A;  4XCO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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