5LZKA

Structure of the domain of unknown function duf1669 from human fam83b
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
169
structure length
169
Chain Sequence
GTHIDLLFHPPRAHLLTIKETIRKMIKEARKVIALVMDIFTDVDIFKEIVEASTRGVSVYILLDESNFNHFLNMTEKQGCSVQRLRNIRVRTVKGQDYLSKTGAKFHGKMEQKFLLVDCQKVMYGSYSYMWSFEKAHLSMVQIITGQLVESFDEEFRTLYARSCVPSSF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the domain of unknown function DUF1669 from human FAM83B
rcsb
molecule tags Structural genomics
source organism Homo sapiens
molecule keywords Protein FAM83B
total genus 51
structure length 169
sequence length 169
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-09-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.870.10 Alpha Beta 2-Layer Sandwich Endonuclease; Chain A Endonuclease Chain A 5lzkA00
1MU7A 4URJA 2C1LA 4GELA 3SQ8A 5BQTA 4H4AA 1RG2A 2F5TX 4GENA 4GGKA 3HSIA 2O8RA 1Q32A 3SQ5A 3SQ3A 1XDOA 1JY1A 1V0TA 1V0WA 1V0UA 5BOXA 1NOPA 1V0VA 1F0IA 4GEMA 1RGUA 4RCTA 3SQ7A 1V0SA 1RH0A 1XDPA 2ZE9A 5BPDA 3QPHA 1V0YA 1V0RA 5BPIA 1QZQA 1BYRA 1RGTA 5LZKA 1MU9A 4GGJA 1BYSA 1RFIA 1RG1A 2ZE4A 1RFFA
chains in the Genus database with same CATH superfamily
1MU7A 4URJA 2C1LA 4GELA 3SQ8A 5BQTA 4H4AA 1RG2A 2F5TX 4GENA 4GGKA 3HSIA 2O8RA 1Q32A 1ODGA 3HRLA 3SQ5A 3SQ3A 1CW0A 1XDOA 1JY1A 1V0TA 1V0WA 1V0UA 2YMBA 3R3PA 1V0VA 1F0IA 5BOXA 4GEMA 1NOPA 1RGUA 4RCTA 3SQ7A 1V0SA 1RH0A 1XDPA 2ZE9A 5BPDA 1VSRA 3QPHA 1V0YA 1V0RA 5BPIA 1QZQA 1BYRA 1RGTA 5LZKA 1MU9A 4GGJA 1BYSA 1RFIA 1RG1A 4A5ZA 2ZE4A 1RFFA
chains in the Genus database with same CATH topology
1MU7A 4URJA 2C1LA 4GELA 3SQ8A 5BQTA 4H4AA 1RG2A 2F5TX 4GENA 4GGKA 3HSIA 2O8RA 1Q32A 3SQ5A 3SQ3A 1XDOA 1JY1A 1V0TA 1V0WA 1V0UA 5BOXA 1NOPA 1V0VA 1F0IA 4GEMA 1RGUA 4RCTA 3SQ7A 1V0SA 1RH0A 1XDPA 2ZE9A 5BPDA 3QPHA 1V0YA 1V0RA 5BPIA 1QZQA 1BYRA 1RGTA 5LZKA 1MU9A 4GGJA 1BYSA 1RFIA 1RG1A 2ZE4A 1RFFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MU7 A;  4URJ A;  2C1L A;  4GEL A;  3SQ8 A;  5BQT A;  4H4A A;  1RG2 A;  2F5T X;  4GEN A;  4GGK A;  3HSI A;  2O8R A;  1Q32 A;  3SQ5 A;  3SQ3 A;  1XDO A;  1JY1 A;  1V0T A;  1V0W A;  1V0U A;  5BOX A;  1NOP A;  1V0V A;  1F0I A;  4GEM A;  1RGU A;  4RCT A;  3SQ7 A;  1V0S A;  1RH0 A;  1XDP A;  2ZE9 A;  5BPD A;  3QPH A;  1V0Y A;  1V0R A;  5BPI A;  1QZQ A;  1BYR A;  1RGT A;  5LZK A;  1MU9 A;  4GGJ A;  1BYS A;  1RFI A;  1RG1 A;  2ZE4 A;  1RFF A; 
#chains in the Genus database with same CATH topology
 1MU7 A;  4URJ A;  2C1L A;  4GEL A;  3SQ8 A;  5BQT A;  4H4A A;  1RG2 A;  2F5T X;  4GEN A;  4GGK A;  3HSI A;  2O8R A;  1Q32 A;  1ODG A;  3HRL A;  3SQ5 A;  3SQ3 A;  1CW0 A;  1XDO A;  1JY1 A;  1V0T A;  1V0W A;  1V0U A;  2YMB A;  3R3P A;  1V0V A;  1F0I A;  5BOX A;  4GEM A;  1NOP A;  1RGU A;  4RCT A;  3SQ7 A;  1V0S A;  1RH0 A;  1XDP A;  2ZE9 A;  5BPD A;  1VSR A;  3QPH A;  1V0Y A;  1V0R A;  5BPI A;  1QZQ A;  1BYR A;  1RGT A;  5LZK A;  1MU9 A;  4GGJ A;  1BYS A;  1RFI A;  1RG1 A;  4A5Z A;  2ZE4 A;  1RFF A; 
#chains in the Genus database with same CATH homology
 1MU7 A;  4URJ A;  2C1L A;  4GEL A;  3SQ8 A;  5BQT A;  4H4A A;  1RG2 A;  2F5T X;  4GEN A;  4GGK A;  3HSI A;  2O8R A;  1Q32 A;  3SQ5 A;  3SQ3 A;  1XDO A;  1JY1 A;  1V0T A;  1V0W A;  1V0U A;  5BOX A;  1NOP A;  1V0V A;  1F0I A;  4GEM A;  1RGU A;  4RCT A;  3SQ7 A;  1V0S A;  1RH0 A;  1XDP A;  2ZE9 A;  5BPD A;  3QPH A;  1V0Y A;  1V0R A;  5BPI A;  1QZQ A;  1BYR A;  1RGT A;  5LZK A;  1MU9 A;  4GGJ A;  1BYS A;  1RFI A;  1RG1 A;  2ZE4 A;  1RFF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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