5I7KA

Crystal structure of human splunc1 dolphin mutant d1 (g58a, s61a, g62e, g63d, g66d, i67t)
Total Genus 46
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
213
structure length
199
Chain Sequence
b'SPTGLAGSLTNALSNALLAEDLLDTLENLPLLDILLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGLVQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDCTHSPGSLQISLLPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVHDIVNMLIHGLQFVIK'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords BPI fold-containing family A member 1
publication title Structural Features Essential to the Antimicrobial Functions of Human SPLUNC1.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Antimicrobial protein
total genus 46
structure length 199
sequence length 213
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-02-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01273 LBP_BPI_CETP LBP / BPI / CETP family, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.15.10.10 Alpha Beta Super Roll Bactericidal permeability-increasing protein; domain 1 Bactericidal permeability-increasing protein; domain 1 5i7kA00
1BP1A 5I7JA 4M4DA 3ZPMA 4F2AA 1EWFA 5I7KA 4KGHA 5I7LA 4EWSA 4KGOA 2OBDA
chains in the Genus database with same CATH superfamily
3L6IA 5I7JA 3ZPMA 4F2AA 4KGHA 1USUB 5I7LA 2RQFA 3E8TA 3N72A 2OBDA 2RCKA 1BP1A 1USVB 1EWFA 3A1ZA 3AOTA 3UV1A 4M4DA 5I7KA 4G0SA 4KGOA 3E8WA 4EWSA 3AOSA 3H4ZA
chains in the Genus database with same CATH topology
3L6IA 5I7JA 3ZPMA 4F2AA 4KGHA 1USUB 5I7LA 2RQFA 3E8TA 3N72A 2OBDA 2RCKA 1BP1A 1USVB 1EWFA 3A1ZA 3AOTA 3UV1A 4M4DA 5I7KA 4G0SA 4KGOA 3E8WA 4EWSA 3AOSA 3H4ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BP1 A;  5I7J A;  4M4D A;  3ZPM A;  4F2A A;  1EWF A;  5I7K A;  4KGH A;  5I7L A;  4EWS A;  4KGO A;  2OBD A; 
#chains in the Genus database with same CATH topology
 3L6I A;  5I7J A;  3ZPM A;  4F2A A;  4KGH A;  1USU B;  5I7L A;  2RQF A;  3E8T A;  3N72 A;  2OBD A;  2RCK A;  1BP1 A;  1USV B;  1EWF A;  3A1Z A;  3AOT A;  3UV1 A;  4M4D A;  5I7K A;  4G0S A;  4KGO A;  3E8W A;  4EWS A;  3AOS A;  3H4Z A; 
#chains in the Genus database with same CATH homology
 3L6I A;  5I7J A;  3ZPM A;  4F2A A;  4KGH A;  1USU B;  5I7L A;  2RQF A;  3E8T A;  3N72 A;  2OBD A;  2RCK A;  1BP1 A;  1USV B;  1EWF A;  3A1Z A;  3AOT A;  3UV1 A;  4M4D A;  5I7K A;  4G0S A;  4KGO A;  3E8W A;  4EWS A;  3AOS A;  3H4Z A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...