The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
69
|
Knots found |
|
sequence length |
197
|
structure length |
197
|
Chain Sequence |
LVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKKAKINEGITQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQREEKGMYSRPSLSEEEIQKILKKWAYEDVIK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of a class II TrmH tRNA-modifying enzyme from Aquifex aeolicus.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| source organism |
Aquifex aeolicus
|
| molecule keywords |
tRNA (Guanosine-2'-O-)-methyltransferase
|
| total genus |
69
|
| structure length |
197
|
| sequence length |
197
|
| other databases |
 KnotProt 2.0: K +31
|
| ec nomenclature |
ec
2.1.1.34: tRNA (guanosine(18)-2'-O)-methyltransferase. |
| pdb deposition date | 2005-04-30 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00588 | SpoU_methylase | SpoU rRNA Methylase family |
| A | PF12105 | SpoU_methylas_C | SpoU, rRNA methylase, C-terminal |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | Alpha/beta knot |
#chains in the Genus database with same CATH superfamily 5GM8 A; 4KDZ A; 5CO4 A; 1UAJ A; 1ZJR A; 1X7P A; 2I6D A; 4YQJ A; 4YQK A; 4CNG A; 3IC6 A; 4YQ4 A; 4KGN A; 3NK6 A; 3QUV A; 1UAK A; 1UAM A; 3ILK A; 3OII A; 4MCB A; 4YVG A; 1NXZ A; 4YQ3 A; 1X7O A; 4YQ6 A; 4H3Z A; 2HA8 A; 4E8B A; 4YQO A; 1TO0 A; 1Z85 A; 2Z0Y A; 4YQT A; 4YQA A; 3OIN A; 4YPZ A; 3AIA A; 2V3K A; 1GZ0 A; 4MCC A; 1OY5 A; 5FAI A; 1VHK A; 1MXI A; 3N4K A; 2QWV A; 2V3J A; 4YQS A; 4RG1 A; 4YQ1 A; 4YPW A; 3BBE A; 2YY8 A; 4YQR A; 4L69 A; 4YQG A; 3DCM X; 4CNF A; 5GMB A; 1VHY A; 3ONP A; 3KNU A; 4YQQ A; 4X3M A; 3NK7 A; 5GMC A; 1NS5 A; 4YQ7 A; 4J3C A; 4PZK A; 3GYQ A; 4YVI A; 4YQL A; 2EGV A; 4YQ0 A; 4YQD A; 4JAK A; 3IEF A; 4YQ2 A; 4MCD A; 1P9P A; 4JAL A; 4X3L A; 3KY7 A; 1K3R A; 2QMM A; 4YQP A; 3O7B A; 1J85 A; 4CNE A; 3L8U A; 4YQB A; 4CND A; 4YQ5 A; 4YVK A; 4IG6 A; 4YQ8 A; 3BBH A; 3BBD A; 3E5Y A; 1IPA A; 4YVH A; 3N4J A; 4YPY A; 2O3A A; 3KTY A; 1V2X A; 4YQN A; 3AXZ A; 1V6Z A; 1VH0 A; 3OIJ A; 3AI9 X; 1O6D A; 4YPX A; 3KW2 A; 4YQC A; 4FAK A; 1UAL A; 4YQI A; 4H3Y A; 4YQ9 A; 5D9F A; 2CX8 A; 4XBO A; 2EGW A; 4YVJ A; #chains in the Genus database with same CATH topology 5GM8 A; 4KDZ A; 5CO4 A; 1UAJ A; 1ZJR A; 1X7P A; 2I6D A; 4YQJ A; 4YQK A; 4CNG A; 3IC6 A; 4JWJ A; 4YQ4 A; 4KGN A; 3NK6 A; 3QUV A; 1UAK A; 1UAM A; 3ILK A; 3OII A; 4MCB A; 4YVG A; 1NXZ A; 4YQ3 A; 1X7O A; 4YQ6 A; 4H3Z A; 2HA8 A; 4E8B A; 4YQO A; 1TO0 A; 1Z85 A; 2Z0Y A; 4YQT A; 4YQA A; 3OIN A; 4YPZ A; 3AIA A; 2V3K A; 1GZ0 A; 4MCC A; 1OY5 A; 5FAI A; 1VHK A; 1MXI A; 3N4K A; 2QWV A; 2V3J A; 4YQS A; 4RG1 A; 4YQ1 A; 4YPW A; 3BBE A; 4FMW A; 2YY8 A; 4YQR A; 4L69 A; 4YQG A; 3DCM X; 4CNF A; 5GMB A; 1VHY A; 3ONP A; 3KNU A; 4YQQ A; 4X3M A; 3NK7 A; 5GMC A; 1NS5 A; 4YQ7 A; 4J3C A; 4PZK A; 3GYQ A; 4YVI A; 4YQL A; 2EGV A; 4YQ0 A; 4YQD A; 4JAK A; 3IEF A; 4YQ2 A; 4JWH A; 4MCD A; 1P9P A; 4JAL A; 4X3L A; 3KY7 A; 1K3R A; 2QMM A; 4YQP A; 3O7B A; 1J85 A; 4CNE A; 3L8U A; 4YQB A; 4CND A; 4YQ5 A; 4YVK A; 4IG6 A; 4YQ8 A; 3BBH A; 3BBD A; 3E5Y A; 1IPA A; 4YVH A; 3N4J A; 4YPY A; 2O3A A; 3KTY A; 4JWF A; 1V2X A; 4YQN A; 3AXZ A; 1V6Z A; 1VH0 A; 3OIJ A; 4JWG A; 3AI9 X; 1O6D A; 4YPX A; 3KW2 A; 4YQC A; 4FAK A; 1UAL A; 4YQI A; 4H3Y A; 4YQ9 A; 5D9F A; 2CX8 A; 4XBO A; 2EGW A; 4YVJ A; #chains in the Genus database with same CATH homology 5GM8 A; 4KDZ A; 5CO4 A; 1UAJ A; 1ZJR A; 1X7P A; 2I6D A; 4YQJ A; 4YQK A; 4CNG A; 3IC6 A; 4JWJ A; 4YQ4 A; 4KGN A; 3NK6 A; 3QUV A; 1UAK A; 1UAM A; 3ILK A; 3OII A; 4MCB A; 4YVG A; 1NXZ A; 4YQ3 A; 1X7O A; 4YQ6 A; 4H3Z A; 2HA8 A; 4E8B A; 4YQO A; 1TO0 A; 1Z85 A; 2Z0Y A; 4YQT A; 4YQA A; 3OIN A; 4YPZ A; 3AIA A; 2V3K A; 1GZ0 A; 4MCC A; 1OY5 A; 5FAI A; 1VHK A; 1MXI A; 3N4K A; 2QWV A; 2V3J A; 4YQS A; 4RG1 A; 4YQ1 A; 4YPW A; 3BBE A; 4FMW A; 2YY8 A; 4YQR A; 4L69 A; 4YQG A; 3DCM X; 4CNF A; 5GMB A; 1VHY A; 3ONP A; 3KNU A; 4YQQ A; 4X3M A; 3NK7 A; 5GMC A; 1NS5 A; 4YQ7 A; 4J3C A; 4PZK A; 3GYQ A; 4YVI A; 4YQL A; 2EGV A; 4YQ0 A; 4YQD A; 4JAK A; 3IEF A; 4YQ2 A; 4JWH A; 4MCD A; 1P9P A; 4JAL A; 4X3L A; 3KY7 A; 1K3R A; 2QMM A; 4YQP A; 3O7B A; 1J85 A; 4CNE A; 3L8U A; 4YQB A; 4CND A; 4YQ5 A; 4YVK A; 4IG6 A; 4YQ8 A; 3BBH A; 3BBD A; 3E5Y A; 1IPA A; 4YVH A; 3N4J A; 4YPY A; 2O3A A; 3KTY A; 4JWF A; 1V2X A; 4YQN A; 3AXZ A; 1V6Z A; 1VH0 A; 3OIJ A; 4JWG A; 3AI9 X; 1O6D A; 4YPX A; 3KW2 A; 4YQC A; 4FAK A; 1UAL A; 4YQI A; 4H3Y A; 4YQ9 A; 5D9F A; 2CX8 A; 4XBO A; 2EGW A; 4YVJ A;
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