2O3A | Genus

Total Genus 46

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	46
Knots found	KnotProt 2.0: K +3₁
sequence length	167
structure length	161
Chain Sequence	LEVYVLRLGHRPDKRISTHVALTARAFGAKGIYFDTEDKSVFESVRDVVERWGGDFFIKAVSWKKLLREFDGLKVHLTMYGIPLPQKLEEIKRADKVLVVVGPPEVYELCDLNISIGTQPHSEVAALAVFLDRVLGKVFDISFDDAKIKVIPSERGKRVVS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 161 atoms

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161 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure of a protein AF_0751 from Archaeoglobus fulgidus rcsb
molecule keywords	UPF0106 protein AF_0751
molecule tags	Structural genomics, unknown function
source organism	Archaeoglobus fulgidus
total genus	46
structure length	161
sequence length	167
chains with identical sequence	B
other databases	KnotProt 2.0: K +3₁
ec nomenclature	ec 2.1.1.206: tRNA (cytidine(56)-2'-O)-methyltransferase.
pdb deposition date	2006-12-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01994	Trm56	tRNA ribose 2'-O-methyltransferase, aTrm56

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	Alpha/beta knot	2o3aA00

4X3LA 4CNDA 4YQQA 3KTYA 4E8BA 1P9PA 4YQOA 4YVGA 3ONPA 3N4KA 3BBDA 4YQ7A 4YQ3A 5GMCA 1UALA 4MCBA 3OIIA 4X3MA 1J85A 3KY7A 4XBOA 3IEFA 4YQRA 1MXIA 1IPAA 2YY8A 5CO4A 3BBHA 3DCMX 2QMMA 4YQPA 4JALA 1NXZA 2QWVA 3KNUA 4YQJA 4YPXA 2EGVA 1GZ0A 5FAIA 3AI9X 4YQ1A 2CX8A 4RG1A 5GM8A 1V6ZA 4YQ4A 3BBEA 1VHKA 3NK6A 3N4JA 4YQ0A 4YQNA 4H3ZA 4YVIA 4YQAA 1UAJA 4YQIA 4YQKA 4MCDA 4CNEA 4CNGA 2V3JA 1VHYA 4YQLA 3KW2A 4PZKA 4YQDA 4J3CA 3OIJA 2Z0YA 4YVHA 3QUVA 4YQSA 4YPYA 3O7BA 4H3YA 4YQ6A 4YVJA 4YPZA 3AIAA 4L69A 2I6DA 3IC6A 3AXZA 4YQTA 4IG6A 1TO0A 2HA8A 1NS5A 1UAKA 4YQGA 4YQ9A 4FAKA 3L8UA 4MCCA 4YVKA 5GMBA 1O6DA 1ZJRA 1X7PA 1OY5A 2V3KA 4YQ8A 4YQ2A 1Z85A 1K3RA 3GYQA 4KDZA 1X7OA 4CNFA 2EGWA 2O3AA 3OINA 1V2XA 4YQCA 3ILKA 4JAKA 4YQBA 4KGNA 5D9FA 3E5YA 1UAMA 1VH0A 4YPWA 4YQ5A 3NK7A
chains in the Genus database with same CATH superfamily

4X3LA 4CNDA 4YQQA 3KTYA 4JWHA 4E8BA 1P9PA 4YQOA 4YVGA 3ONPA 3N4KA 3BBDA 4YQ7A 4YQ3A 4FMWA 5GMCA 1UALA 4MCBA 3OIIA 4X3MA 4JWJA 1J85A 3KY7A 4XBOA 3IEFA 4YQRA 1MXIA 1IPAA 2YY8A 5CO4A 3BBHA 3DCMX 2QMMA 4YQPA 4JALA 1NXZA 2QWVA 3KNUA 4YQJA 4YPXA 2EGVA 1GZ0A 5FAIA 3AI9X 4YQ1A 2CX8A 4RG1A 5GM8A 1V6ZA 4YQ4A 3BBEA 1VHKA 3NK6A 3N4JA 4YQ0A 4YQNA 4H3ZA 4YVIA 4YQAA 1UAJA 4YQIA 4YQKA 4MCDA 4CNEA 4CNGA 2V3JA 1VHYA 4YQLA 3KW2A 4PZKA 4YQDA 4J3CA 3OIJA 2Z0YA 4YVHA 3QUVA 4YQSA 4YPYA 3O7BA 4H3YA 4YQ6A 4YVJA 4YPZA 3AIAA 4L69A 2I6DA 3IC6A 3AXZA 4YQTA 4IG6A 1TO0A 2HA8A 1NS5A 1UAKA 4YQGA 4YQ9A 4FAKA 3L8UA 4MCCA 4YVKA 5GMBA 1O6DA 1ZJRA 1X7PA 1OY5A 2V3KA 4YQ8A 4YQ2A 4JWGA 4JWFA 1Z85A 1K3RA 3GYQA 4KDZA 1X7OA 4CNFA 2EGWA 2O3AA 3OINA 1V2XA 4YQCA 3ILKA 4JAKA 4YQBA 4KGNA 5D9FA 3E5YA 1UAMA 1VH0A 4YPWA 4YQ5A 3NK7A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4X3L A;  4CND A;  4YQQ A;  3KTY A;  4E8B A;  1P9P A;  4YQO A;  4YVG A;  3ONP A;  3N4K A;  3BBD A;  4YQ7 A;  4YQ3 A;  5GMC A;  1UAL A;  4MCB A;  3OII A;  4X3M A;  1J85 A;  3KY7 A;  4XBO A;  3IEF A;  4YQR A;  1MXI A;  1IPA A;  2YY8 A;  5CO4 A;  3BBH A;  3DCM X;  2QMM A;  4YQP A;  4JAL A;  1NXZ A;  2QWV A;  3KNU A;  4YQJ A;  4YPX A;  2EGV A;  1GZ0 A;  5FAI A;  3AI9 X;  4YQ1 A;  2CX8 A;  4RG1 A;  5GM8 A;  1V6Z A;  4YQ4 A;  3BBE A;  1VHK A;  3NK6 A;  3N4J A;  4YQ0 A;  4YQN A;  4H3Z A;  4YVI A;  4YQA A;  1UAJ A;  4YQI A;  4YQK A;  4MCD A;  4CNE A;  4CNG A;  2V3J A;  1VHY A;  4YQL A;  3KW2 A;  4PZK A;  4YQD A;  4J3C A;  3OIJ A;  2Z0Y A;  4YVH A;  3QUV A;  4YQS A;  4YPY A;  3O7B A;  4H3Y A;  4YQ6 A;  4YVJ A;  4YPZ A;  3AIA A;  4L69 A;  2I6D A;  3IC6 A;  3AXZ A;  4YQT A;  4IG6 A;  1TO0 A;  2HA8 A;  1NS5 A;  1UAK A;  4YQG A;  4YQ9 A;  4FAK A;  3L8U A;  4MCC A;  4YVK A;  5GMB A;  1O6D A;  1ZJR A;  1X7P A;  1OY5 A;  2V3K A;  4YQ8 A;  4YQ2 A;  1Z85 A;  1K3R A;  3GYQ A;  4KDZ A;  1X7O A;  4CNF A;  2EGW A;  2O3A A;  3OIN A;  1V2X A;  4YQC A;  3ILK A;  4JAK A;  4YQB A;  4KGN A;  5D9F A;  3E5Y A;  1UAM A;  1VH0 A;  4YPW A;  4YQ5 A;  3NK7 A; 
#chains in the Genus database with same CATH topology
 4X3L A;  4CND A;  4YQQ A;  3KTY A;  4JWH A;  4E8B A;  1P9P A;  4YQO A;  4YVG A;  3ONP A;  3N4K A;  3BBD A;  4YQ7 A;  4YQ3 A;  4FMW A;  5GMC A;  1UAL A;  4MCB A;  3OII A;  4X3M A;  4JWJ A;  1J85 A;  3KY7 A;  4XBO A;  3IEF A;  4YQR A;  1MXI A;  1IPA A;  2YY8 A;  5CO4 A;  3BBH A;  3DCM X;  2QMM A;  4YQP A;  4JAL A;  1NXZ A;  2QWV A;  3KNU A;  4YQJ A;  4YPX A;  2EGV A;  1GZ0 A;  5FAI A;  3AI9 X;  4YQ1 A;  2CX8 A;  4RG1 A;  5GM8 A;  1V6Z A;  4YQ4 A;  3BBE A;  1VHK A;  3NK6 A;  3N4J A;  4YQ0 A;  4YQN A;  4H3Z A;  4YVI A;  4YQA A;  1UAJ A;  4YQI A;  4YQK A;  4MCD A;  4CNE A;  4CNG A;  2V3J A;  1VHY A;  4YQL A;  3KW2 A;  4PZK A;  4YQD A;  4J3C A;  3OIJ A;  2Z0Y A;  4YVH A;  3QUV A;  4YQS A;  4YPY A;  3O7B A;  4H3Y A;  4YQ6 A;  4YVJ A;  4YPZ A;  3AIA A;  4L69 A;  2I6D A;  3IC6 A;  3AXZ A;  4YQT A;  4IG6 A;  1TO0 A;  2HA8 A;  1NS5 A;  1UAK A;  4YQG A;  4YQ9 A;  4FAK A;  3L8U A;  4MCC A;  4YVK A;  5GMB A;  1O6D A;  1ZJR A;  1X7P A;  1OY5 A;  2V3K A;  4YQ8 A;  4YQ2 A;  4JWG A;  4JWF A;  1Z85 A;  1K3R A;  3GYQ A;  4KDZ A;  1X7O A;  4CNF A;  2EGW A;  2O3A A;  3OIN A;  1V2X A;  4YQC A;  3ILK A;  4JAK A;  4YQB A;  4KGN A;  5D9F A;  3E5Y A;  1UAM A;  1VH0 A;  4YPW A;  4YQ5 A;  3NK7 A; 
#chains in the Genus database with same CATH homology
 4X3L A;  4CND A;  4YQQ A;  3KTY A;  4JWH A;  4E8B A;  1P9P A;  4YQO A;  4YVG A;  3ONP A;  3N4K A;  3BBD A;  4YQ7 A;  4YQ3 A;  4FMW A;  5GMC A;  1UAL A;  4MCB A;  3OII A;  4X3M A;  4JWJ A;  1J85 A;  3KY7 A;  4XBO A;  3IEF A;  4YQR A;  1MXI A;  1IPA A;  2YY8 A;  5CO4 A;  3BBH A;  3DCM X;  2QMM A;  4YQP A;  4JAL A;  1NXZ A;  2QWV A;  3KNU A;  4YQJ A;  4YPX A;  2EGV A;  1GZ0 A;  5FAI A;  3AI9 X;  4YQ1 A;  2CX8 A;  4RG1 A;  5GM8 A;  1V6Z A;  4YQ4 A;  3BBE A;  1VHK A;  3NK6 A;  3N4J A;  4YQ0 A;  4YQN A;  4H3Z A;  4YVI A;  4YQA A;  1UAJ A;  4YQI A;  4YQK A;  4MCD A;  4CNE A;  4CNG A;  2V3J A;  1VHY A;  4YQL A;  3KW2 A;  4PZK A;  4YQD A;  4J3C A;  3OIJ A;  2Z0Y A;  4YVH A;  3QUV A;  4YQS A;  4YPY A;  3O7B A;  4H3Y A;  4YQ6 A;  4YVJ A;  4YPZ A;  3AIA A;  4L69 A;  2I6D A;  3IC6 A;  3AXZ A;  4YQT A;  4IG6 A;  1TO0 A;  2HA8 A;  1NS5 A;  1UAK A;  4YQG A;  4YQ9 A;  4FAK A;  3L8U A;  4MCC A;  4YVK A;  5GMB A;  1O6D A;  1ZJR A;  1X7P A;  1OY5 A;  2V3K A;  4YQ8 A;  4YQ2 A;  4JWG A;  4JWF A;  1Z85 A;  1K3R A;  3GYQ A;  4KDZ A;  1X7O A;  4CNF A;  2EGW A;  2O3A A;  3OIN A;  1V2X A;  4YQC A;  3ILK A;  4JAK A;  4YQB A;  4KGN A;  5D9F A;  3E5Y A;  1UAM A;  1VH0 A;  4YPW A;  4YQ5 A;  3NK7 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2O3AA

Total Genus

Knots found

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations