3L8U | Genus

Total Genus 46

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	46
Knots found	KnotProt 2.0: K +3₁
sequence length	161
structure length	154
Chain Sequence	LGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMYWDLDVHFYDSLNDFMNICSGKLHLITKFANKTYSDENYDDSEHHYFLFGREDKGLPEEFMRQHSEKALRIPVNDQHVRSLNLSNTVCMIVYEALRQQDFIGLELSHT

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure of SMU.1707c, a putative rRNA methyltransferase from streptococcus mutans UA159 rcsb
molecule keywords	Putative rRNA methylase
molecule tags	Transferase
source organism	Streptococcus mutans
total genus	46
structure length	154
sequence length	161
chains with identical sequence	B
other databases	KnotProt 2.0: K +3₁
ec nomenclature
pdb deposition date	2010-01-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00588	SpoU_methylase	SpoU rRNA Methylase family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	Alpha/beta knot	3l8uA00

2O3AA 4YPWA 1V6ZA 4YQBA 3KNUA 2EGWA 1UAMA 3O7BA 1NS5A 2HA8A 5FAIA 4YQSA 4FAKA 3IEFA 2QWVA 2EGVA 1Z85A 4YQLA 5CO4A 2I6DA 1V2XA 1NXZA 1VH0A 4YQPA 4H3ZA 5GM8A 3BBHA 4MCCA 4YQDA 4YQKA 3KTYA 1UAKA 4X3LA 4YQGA 3IC6A 4YPXA 4YVIA 4YQAA 2V3JA 4KGNA 4YVGA 1TO0A 4IG6A 4JALA 5D9FA 4YQ2A 4CNFA 4JAKA 1UAJA 4H3YA 3AI9X 2Z0YA 4PZKA 4YQJA 4RG1A 3N4JA 3N4KA 3NK7A 4YQQA 4CNEA 4YQ1A 2V3KA 4YQNA 3KY7A 3L8UA 4CNDA 4YQ0A 3DCMX 4YVJA 4YQ6A 4YQ8A 4YQ3A 1O6DA 4MCBA 3BBDA 4YQIA 1X7OA 4X3MA 4YPZA 3OIJA 3BBEA 4YQOA 1P9PA 3ILKA 1GZ0A 4YVKA 1X7PA 1VHKA 4YQ9A 3GYQA 4YVHA 3ONPA 5GMCA 3OINA 3OIIA 1IPAA 3E5YA 1ZJRA 2CX8A 4CNGA 4YQ7A 4YQ4A 1MXIA 3AIAA 5GMBA 4J3CA 1UALA 1OY5A 4L69A 4E8BA 4YPYA 4YQCA 4KDZA 1K3RA 3QUVA 1J85A 3NK6A 4YQRA 2QMMA 2YY8A 3AXZA 4YQTA 4MCDA 3KW2A 1VHYA 4YQ5A 4XBOA
chains in the Genus database with same CATH superfamily

2O3AA 4YPWA 1V6ZA 4YQBA 3KNUA 2EGWA 1UAMA 3O7BA 1NS5A 2HA8A 5FAIA 4YQSA 4FAKA 3IEFA 2QWVA 2EGVA 1Z85A 4YQLA 5CO4A 2I6DA 1V2XA 1NXZA 1VH0A 4YQPA 4FMWA 4H3ZA 5GM8A 3BBHA 4MCCA 4YQDA 4YQKA 3KTYA 1UAKA 4X3LA 4YQGA 3IC6A 4YPXA 4YVIA 4YQAA 2V3JA 4KGNA 4YVGA 1TO0A 4IG6A 4JALA 5D9FA 4YQ2A 4CNFA 4JAKA 1UAJA 4H3YA 3AI9X 2Z0YA 4PZKA 4YQJA 4RG1A 3N4JA 3N4KA 3NK7A 4YQQA 4CNEA 4YQ1A 2V3KA 4YQNA 3KY7A 3L8UA 4CNDA 4YQ0A 3DCMX 4YVJA 4YQ6A 4YQ8A 4YQ3A 1O6DA 4MCBA 3BBDA 4JWHA 4YQIA 1X7OA 4JWGA 4X3MA 4YPZA 3OIJA 3BBEA 4YQOA 1P9PA 3ILKA 1GZ0A 4YVKA 1X7PA 1VHKA 4YQ9A 3GYQA 4YVHA 3ONPA 5GMCA 3OINA 3OIIA 1IPAA 4JWFA 3E5YA 1ZJRA 2CX8A 4CNGA 4YQ7A 4YQ4A 1MXIA 3AIAA 5GMBA 4J3CA 1UALA 1OY5A 4L69A 4E8BA 4YPYA 4YQCA 4JWJA 4KDZA 1K3RA 3QUVA 1J85A 3NK6A 4YQRA 2QMMA 2YY8A 3AXZA 4YQTA 4MCDA 3KW2A 1VHYA 4YQ5A 4XBOA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2O3A A;  4YPW A;  1V6Z A;  4YQB A;  3KNU A;  2EGW A;  1UAM A;  3O7B A;  1NS5 A;  2HA8 A;  5FAI A;  4YQS A;  4FAK A;  3IEF A;  2QWV A;  2EGV A;  1Z85 A;  4YQL A;  5CO4 A;  2I6D A;  1V2X A;  1NXZ A;  1VH0 A;  4YQP A;  4H3Z A;  5GM8 A;  3BBH A;  4MCC A;  4YQD A;  4YQK A;  3KTY A;  1UAK A;  4X3L A;  4YQG A;  3IC6 A;  4YPX A;  4YVI A;  4YQA A;  2V3J A;  4KGN A;  4YVG A;  1TO0 A;  4IG6 A;  4JAL A;  5D9F A;  4YQ2 A;  4CNF A;  4JAK A;  1UAJ A;  4H3Y A;  3AI9 X;  2Z0Y A;  4PZK A;  4YQJ A;  4RG1 A;  3N4J A;  3N4K A;  3NK7 A;  4YQQ A;  4CNE A;  4YQ1 A;  2V3K A;  4YQN A;  3KY7 A;  3L8U A;  4CND A;  4YQ0 A;  3DCM X;  4YVJ A;  4YQ6 A;  4YQ8 A;  4YQ3 A;  1O6D A;  4MCB A;  3BBD A;  4YQI A;  1X7O A;  4X3M A;  4YPZ A;  3OIJ A;  3BBE A;  4YQO A;  1P9P A;  3ILK A;  1GZ0 A;  4YVK A;  1X7P A;  1VHK A;  4YQ9 A;  3GYQ A;  4YVH A;  3ONP A;  5GMC A;  3OIN A;  3OII A;  1IPA A;  3E5Y A;  1ZJR A;  2CX8 A;  4CNG A;  4YQ7 A;  4YQ4 A;  1MXI A;  3AIA A;  5GMB A;  4J3C A;  1UAL A;  1OY5 A;  4L69 A;  4E8B A;  4YPY A;  4YQC A;  4KDZ A;  1K3R A;  3QUV A;  1J85 A;  3NK6 A;  4YQR A;  2QMM A;  2YY8 A;  3AXZ A;  4YQT A;  4MCD A;  3KW2 A;  1VHY A;  4YQ5 A;  4XBO A; 
#chains in the Genus database with same CATH topology
 2O3A A;  4YPW A;  1V6Z A;  4YQB A;  3KNU A;  2EGW A;  1UAM A;  3O7B A;  1NS5 A;  2HA8 A;  5FAI A;  4YQS A;  4FAK A;  3IEF A;  2QWV A;  2EGV A;  1Z85 A;  4YQL A;  5CO4 A;  2I6D A;  1V2X A;  1NXZ A;  1VH0 A;  4YQP A;  4FMW A;  4H3Z A;  5GM8 A;  3BBH A;  4MCC A;  4YQD A;  4YQK A;  3KTY A;  1UAK A;  4X3L A;  4YQG A;  3IC6 A;  4YPX A;  4YVI A;  4YQA A;  2V3J A;  4KGN A;  4YVG A;  1TO0 A;  4IG6 A;  4JAL A;  5D9F A;  4YQ2 A;  4CNF A;  4JAK A;  1UAJ A;  4H3Y A;  3AI9 X;  2Z0Y A;  4PZK A;  4YQJ A;  4RG1 A;  3N4J A;  3N4K A;  3NK7 A;  4YQQ A;  4CNE A;  4YQ1 A;  2V3K A;  4YQN A;  3KY7 A;  3L8U A;  4CND A;  4YQ0 A;  3DCM X;  4YVJ A;  4YQ6 A;  4YQ8 A;  4YQ3 A;  1O6D A;  4MCB A;  3BBD A;  4JWH A;  4YQI A;  1X7O A;  4JWG A;  4X3M A;  4YPZ A;  3OIJ A;  3BBE A;  4YQO A;  1P9P A;  3ILK A;  1GZ0 A;  4YVK A;  1X7P A;  1VHK A;  4YQ9 A;  3GYQ A;  4YVH A;  3ONP A;  5GMC A;  3OIN A;  3OII A;  1IPA A;  4JWF A;  3E5Y A;  1ZJR A;  2CX8 A;  4CNG A;  4YQ7 A;  4YQ4 A;  1MXI A;  3AIA A;  5GMB A;  4J3C A;  1UAL A;  1OY5 A;  4L69 A;  4E8B A;  4YPY A;  4YQC A;  4JWJ A;  4KDZ A;  1K3R A;  3QUV A;  1J85 A;  3NK6 A;  4YQR A;  2QMM A;  2YY8 A;  3AXZ A;  4YQT A;  4MCD A;  3KW2 A;  1VHY A;  4YQ5 A;  4XBO A; 
#chains in the Genus database with same CATH homology
 2O3A A;  4YPW A;  1V6Z A;  4YQB A;  3KNU A;  2EGW A;  1UAM A;  3O7B A;  1NS5 A;  2HA8 A;  5FAI A;  4YQS A;  4FAK A;  3IEF A;  2QWV A;  2EGV A;  1Z85 A;  4YQL A;  5CO4 A;  2I6D A;  1V2X A;  1NXZ A;  1VH0 A;  4YQP A;  4FMW A;  4H3Z A;  5GM8 A;  3BBH A;  4MCC A;  4YQD A;  4YQK A;  3KTY A;  1UAK A;  4X3L A;  4YQG A;  3IC6 A;  4YPX A;  4YVI A;  4YQA A;  2V3J A;  4KGN A;  4YVG A;  1TO0 A;  4IG6 A;  4JAL A;  5D9F A;  4YQ2 A;  4CNF A;  4JAK A;  1UAJ A;  4H3Y A;  3AI9 X;  2Z0Y A;  4PZK A;  4YQJ A;  4RG1 A;  3N4J A;  3N4K A;  3NK7 A;  4YQQ A;  4CNE A;  4YQ1 A;  2V3K A;  4YQN A;  3KY7 A;  3L8U A;  4CND A;  4YQ0 A;  3DCM X;  4YVJ A;  4YQ6 A;  4YQ8 A;  4YQ3 A;  1O6D A;  4MCB A;  3BBD A;  4JWH A;  4YQI A;  1X7O A;  4JWG A;  4X3M A;  4YPZ A;  3OIJ A;  3BBE A;  4YQO A;  1P9P A;  3ILK A;  1GZ0 A;  4YVK A;  1X7P A;  1VHK A;  4YQ9 A;  3GYQ A;  4YVH A;  3ONP A;  5GMC A;  3OIN A;  3OII A;  1IPA A;  4JWF A;  3E5Y A;  1ZJR A;  2CX8 A;  4CNG A;  4YQ7 A;  4YQ4 A;  1MXI A;  3AIA A;  5GMB A;  4J3C A;  1UAL A;  1OY5 A;  4L69 A;  4E8B A;  4YPY A;  4YQC A;  4JWJ A;  4KDZ A;  1K3R A;  3QUV A;  1J85 A;  3NK6 A;  4YQR A;  2QMM A;  2YY8 A;  3AXZ A;  4YQT A;  4MCD A;  3KW2 A;  1VHY A;  4YQ5 A;  4XBO A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3L8UA

Total Genus

Knots found

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations