3N4JA

Putative rna methyltransferase from yersinia pestis
Total Genus 52

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
Knots found
sequence length
161
structure length
161
Chain Sequence
AMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGYPGALL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TII2 (97-100)TVIII1 (0-3)TIV1 (6-9)TIV3 (107-110)EMPTYAH1 (12-25)AH5 (138-153)TI1 (54-57)S2 (27-32)S3 (58-60)S5 (101-104)TI2 (73-76)S6 (124-125)TII1 (77-80)TI3 (84-87)TI4 (90-93)TI5 (91-94)TI6 (106-109)AH4 (113-117)TII3 (130-133)TII4 (155-158)TIV4 (153-156)S1 (2-7)AH3 (63-70)S4 (80-83)3H2 (121-123)3H1 (51-53)AH2 (41-47)Updating...
connected with : NaN
publication title X-ray crystal structure of putative RNA methyltransferase from Yersinia pestis.
rcsb
molecule keywords RNA methyltransferase
molecule tags Transferase
source organism Yersinia pestis
total genus 52
structure length 161
sequence length 161
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.207: tRNA (cytidine(34)-2'-O)-methyltransferase.
pdb deposition date 2010-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3n4jA00
4YQRA 4KDZA 1NS5A 2O3AA 1IPAA 2YY8A 4YQPA 1MXIA 4CNFA 1V6ZA 4YVIA 4YQTA 4YQ4A 4E8BA 1X7OA 3KY7A 3QUVA 2QMMA 2V3KA 5GM8A 4XBOA 1Z85A 3KTYA 3AIAA 3ONPA 1UAKA 1P9PA 2Z0YA 2HA8A 4YVJA 4X3LA 4YQ3A 4YQSA 4YVKA 1TO0A 2CX8A 4YVGA 3NK6A 3KNUA 3E5YA 4X3MA 5FAIA 3BBEA 3DCMX 4CNDA 4FAKA 1X7PA 3ILKA 3BBDA 3GYQA 3IEFA 4YQIA 2QWVA 4YQ6A 4H3ZA 4CNGA 1GZ0A 3AI9X 4J3CA 3N4KA 5GMBA 5GMCA 1ZJRA 4CNEA 3NK7A 4YPXA 4YQOA 1NXZA 4YQCA 1O6DA 4YVHA 3L8UA 4YQKA 4YQ9A 3N4JA 4YQ0A 4MCCA 4YQ8A 4YQNA 4KGNA 4YQBA 3OIIA 4L69A 3AXZA 4YQLA 3OIJA 4YQDA 4YQ5A 3OINA 5CO4A 1UALA 1V2XA 4MCBA 1VHYA 1UAMA 4H3YA 2V3JA 4YQJA 1UAJA 2EGWA 3IC6A 4YQ2A 4YQQA 4JAKA 4YPZA 4JALA 4YQGA 4RG1A 4YQ7A 4YPYA 1OY5A 4YPWA 3BBHA 5D9FA 3O7BA 1VHKA 2I6DA 2EGVA 1VH0A 4IG6A 4PZKA 1K3RA 4YQAA 1J85A 4YQ1A 4MCDA 3KW2A
chains in the Genus database with same CATH superfamily
4JWJA 4YQRA 4KDZA 1NS5A 2O3AA 1IPAA 2YY8A 4YQPA 1MXIA 4CNFA 1V6ZA 4YVIA 4YQTA 4YQ4A 4E8BA 1X7OA 3KY7A 3QUVA 2QMMA 2V3KA 5GM8A 4XBOA 1Z85A 3KTYA 3AIAA 3ONPA 1UAKA 4FMWA 1P9PA 2Z0YA 2HA8A 4YVJA 4X3LA 4YQ3A 4YQSA 4YVKA 1TO0A 2CX8A 4YVGA 3NK6A 3KNUA 3E5YA 4X3MA 5FAIA 3BBEA 3DCMX 4CNDA 4FAKA 4JWHA 1X7PA 3ILKA 3BBDA 3GYQA 3IEFA 4YQIA 2QWVA 4YQ6A 4H3ZA 4CNGA 1GZ0A 3AI9X 4J3CA 3N4KA 5GMBA 5GMCA 1ZJRA 4CNEA 3NK7A 4YPXA 4YQOA 1NXZA 4YQCA 1O6DA 4YVHA 3L8UA 4YQKA 4YQ9A 3N4JA 4YQ0A 4MCCA 4JWFA 4YQ8A 4YQNA 4KGNA 4YQBA 3OIIA 4L69A 3AXZA 4YQLA 3OIJA 4YQDA 4YQ5A 3OINA 5CO4A 1UALA 1V2XA 4MCBA 1VHYA 1UAMA 4H3YA 2V3JA 4YQJA 1UAJA 2EGWA 3IC6A 4YQ2A 4YQQA 4JAKA 4YPZA 4JALA 4YQGA 4RG1A 4YQ7A 4YPYA 1OY5A 4YPWA 3BBHA 5D9FA 3O7BA 1VHKA 2I6DA 2EGVA 1VH0A 4IG6A 1K3RA 4PZKA 4YQAA 1J85A 4YQ1A 4JWGA 4MCDA 3KW2A
chains in the Genus database with same CATH topology
4JWJA 4YQRA 4KDZA 1NS5A 2O3AA 1IPAA 2YY8A 4YQPA 1MXIA 4CNFA 1V6ZA 4YVIA 4YQTA 4YQ4A 4E8BA 1X7OA 3KY7A 3QUVA 2QMMA 2V3KA 5GM8A 4XBOA 1Z85A 3KTYA 3AIAA 3ONPA 1UAKA 4FMWA 1P9PA 2Z0YA 2HA8A 4YVJA 4X3LA 4YQ3A 4YQSA 4YVKA 1TO0A 2CX8A 4YVGA 3NK6A 3KNUA 3E5YA 4X3MA 5FAIA 3BBEA 3DCMX 4CNDA 4FAKA 4JWHA 1X7PA 3ILKA 3BBDA 3GYQA 3IEFA 4YQIA 2QWVA 4YQ6A 4H3ZA 4CNGA 1GZ0A 3AI9X 4J3CA 3N4KA 5GMBA 5GMCA 1ZJRA 4CNEA 3NK7A 4YPXA 4YQOA 1NXZA 4YQCA 1O6DA 4YVHA 3L8UA 4YQKA 4YQ9A 3N4JA 4YQ0A 4MCCA 4JWFA 4YQ8A 4YQNA 4KGNA 4YQBA 3OIIA 4L69A 3AXZA 4YQLA 3OIJA 4YQDA 4YQ5A 3OINA 5CO4A 1UALA 1V2XA 4MCBA 1VHYA 1UAMA 4H3YA 2V3JA 4YQJA 1UAJA 2EGWA 3IC6A 4YQ2A 4YQQA 4JAKA 4YPZA 4JALA 4YQGA 4RG1A 4YQ7A 4YPYA 1OY5A 4YPWA 3BBHA 5D9FA 3O7BA 1VHKA 2I6DA 2EGVA 1VH0A 4IG6A 1K3RA 4PZKA 4YQAA 1J85A 4YQ1A 4JWGA 4MCDA 3KW2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YQR A;  4KDZ A;  1NS5 A;  2O3A A;  1IPA A;  2YY8 A;  4YQP A;  1MXI A;  4CNF A;  1V6Z A;  4YVI A;  4YQT A;  4YQ4 A;  4E8B A;  1X7O A;  3KY7 A;  3QUV A;  2QMM A;  2V3K A;  5GM8 A;  4XBO A;  1Z85 A;  3KTY A;  3AIA A;  3ONP A;  1UAK A;  1P9P A;  2Z0Y A;  2HA8 A;  4YVJ A;  4X3L A;  4YQ3 A;  4YQS A;  4YVK A;  1TO0 A;  2CX8 A;  4YVG A;  3NK6 A;  3KNU A;  3E5Y A;  4X3M A;  5FAI A;  3BBE A;  3DCM X;  4CND A;  4FAK A;  1X7P A;  3ILK A;  3BBD A;  3GYQ A;  3IEF A;  4YQI A;  2QWV A;  4YQ6 A;  4H3Z A;  4CNG A;  1GZ0 A;  3AI9 X;  4J3C A;  3N4K A;  5GMB A;  5GMC A;  1ZJR A;  4CNE A;  3NK7 A;  4YPX A;  4YQO A;  1NXZ A;  4YQC A;  1O6D A;  4YVH A;  3L8U A;  4YQK A;  4YQ9 A;  3N4J A;  4YQ0 A;  4MCC A;  4YQ8 A;  4YQN A;  4KGN A;  4YQB A;  3OII A;  4L69 A;  3AXZ A;  4YQL A;  3OIJ A;  4YQD A;  4YQ5 A;  3OIN A;  5CO4 A;  1UAL A;  1V2X A;  4MCB A;  1VHY A;  1UAM A;  4H3Y A;  2V3J A;  4YQJ A;  1UAJ A;  2EGW A;  3IC6 A;  4YQ2 A;  4YQQ A;  4JAK A;  4YPZ A;  4JAL A;  4YQG A;  4RG1 A;  4YQ7 A;  4YPY A;  1OY5 A;  4YPW A;  3BBH A;  5D9F A;  3O7B A;  1VHK A;  2I6D A;  2EGV A;  1VH0 A;  4IG6 A;  4PZK A;  1K3R A;  4YQA A;  1J85 A;  4YQ1 A;  4MCD A;  3KW2 A; 
#chains in the Genus database with same CATH topology
 4JWJ A;  4YQR A;  4KDZ A;  1NS5 A;  2O3A A;  1IPA A;  2YY8 A;  4YQP A;  1MXI A;  4CNF A;  1V6Z A;  4YVI A;  4YQT A;  4YQ4 A;  4E8B A;  1X7O A;  3KY7 A;  3QUV A;  2QMM A;  2V3K A;  5GM8 A;  4XBO A;  1Z85 A;  3KTY A;  3AIA A;  3ONP A;  1UAK A;  4FMW A;  1P9P A;  2Z0Y A;  2HA8 A;  4YVJ A;  4X3L A;  4YQ3 A;  4YQS A;  4YVK A;  1TO0 A;  2CX8 A;  4YVG A;  3NK6 A;  3KNU A;  3E5Y A;  4X3M A;  5FAI A;  3BBE A;  3DCM X;  4CND A;  4FAK A;  4JWH A;  1X7P A;  3ILK A;  3BBD A;  3GYQ A;  3IEF A;  4YQI A;  2QWV A;  4YQ6 A;  4H3Z A;  4CNG A;  1GZ0 A;  3AI9 X;  4J3C A;  3N4K A;  5GMB A;  5GMC A;  1ZJR A;  4CNE A;  3NK7 A;  4YPX A;  4YQO A;  1NXZ A;  4YQC A;  1O6D A;  4YVH A;  3L8U A;  4YQK A;  4YQ9 A;  3N4J A;  4YQ0 A;  4MCC A;  4JWF A;  4YQ8 A;  4YQN A;  4KGN A;  4YQB A;  3OII A;  4L69 A;  3AXZ A;  4YQL A;  3OIJ A;  4YQD A;  4YQ5 A;  3OIN A;  5CO4 A;  1UAL A;  1V2X A;  4MCB A;  1VHY A;  1UAM A;  4H3Y A;  2V3J A;  4YQJ A;  1UAJ A;  2EGW A;  3IC6 A;  4YQ2 A;  4YQQ A;  4JAK A;  4YPZ A;  4JAL A;  4YQG A;  4RG1 A;  4YQ7 A;  4YPY A;  1OY5 A;  4YPW A;  3BBH A;  5D9F A;  3O7B A;  1VHK A;  2I6D A;  2EGV A;  1VH0 A;  4IG6 A;  1K3R A;  4PZK A;  4YQA A;  1J85 A;  4YQ1 A;  4JWG A;  4MCD A;  3KW2 A; 
#chains in the Genus database with same CATH homology
 4JWJ A;  4YQR A;  4KDZ A;  1NS5 A;  2O3A A;  1IPA A;  2YY8 A;  4YQP A;  1MXI A;  4CNF A;  1V6Z A;  4YVI A;  4YQT A;  4YQ4 A;  4E8B A;  1X7O A;  3KY7 A;  3QUV A;  2QMM A;  2V3K A;  5GM8 A;  4XBO A;  1Z85 A;  3KTY A;  3AIA A;  3ONP A;  1UAK A;  4FMW A;  1P9P A;  2Z0Y A;  2HA8 A;  4YVJ A;  4X3L A;  4YQ3 A;  4YQS A;  4YVK A;  1TO0 A;  2CX8 A;  4YVG A;  3NK6 A;  3KNU A;  3E5Y A;  4X3M A;  5FAI A;  3BBE A;  3DCM X;  4CND A;  4FAK A;  4JWH A;  1X7P A;  3ILK A;  3BBD A;  3GYQ A;  3IEF A;  4YQI A;  2QWV A;  4YQ6 A;  4H3Z A;  4CNG A;  1GZ0 A;  3AI9 X;  4J3C A;  3N4K A;  5GMB A;  5GMC A;  1ZJR A;  4CNE A;  3NK7 A;  4YPX A;  4YQO A;  1NXZ A;  4YQC A;  1O6D A;  4YVH A;  3L8U A;  4YQK A;  4YQ9 A;  3N4J A;  4YQ0 A;  4MCC A;  4JWF A;  4YQ8 A;  4YQN A;  4KGN A;  4YQB A;  3OII A;  4L69 A;  3AXZ A;  4YQL A;  3OIJ A;  4YQD A;  4YQ5 A;  3OIN A;  5CO4 A;  1UAL A;  1V2X A;  4MCB A;  1VHY A;  1UAM A;  4H3Y A;  2V3J A;  4YQJ A;  1UAJ A;  2EGW A;  3IC6 A;  4YQ2 A;  4YQQ A;  4JAK A;  4YPZ A;  4JAL A;  4YQG A;  4RG1 A;  4YQ7 A;  4YPY A;  1OY5 A;  4YPW A;  3BBH A;  5D9F A;  3O7B A;  1VHK A;  2I6D A;  2EGV A;  1VH0 A;  4IG6 A;  1K3R A;  4PZK A;  4YQA A;  1J85 A;  4YQ1 A;  4JWG A;  4MCD A;  3KW2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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