4JWF | Genus

Total Genus 61

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	61
Knots found	KnotProt 2.0: K +3₁
sequence length	187
structure length	187
Chain Sequence	RIRLGKVVPSSIRIVLDCAFDDLMNDKEINSLCQQVTRCHSANRTALHPVELFATNFGGRLKTRQDFVLKGQQNNWKRYNPTTKSYLEEFESQKEKLVYLSADSDNTITELDEDKIYIIGAIVDKNRYKNLCQNKASEQGIKTAKLPIDEYIKITDRKILTVNQVFEILSLWLEYRDWEKAFMEVIP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 187 atoms

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187 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure of tRNA m1G9 methyltransferase Trm10: insight into the catalytic mechanism and recognition of tRNA substrate. pubmed doi rcsb
molecule keywords	tRNA (guanine(9)-N1)-methyltransferase
molecule tags	Transferase
source organism	Schizosaccharomyces pombe
total genus	61
structure length	187
sequence length	187
chains with identical sequence	B
other databases	KnotProt 2.0: K +3₁
ec nomenclature	ec 2.1.1.221: tRNA (guanine(9)-N(1))-methyltransferase.
pdb deposition date	2013-03-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01746	tRNA_m1G_MT	tRNA (Guanine-1)-methyltransferase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1280.30	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	Alpha/beta knot	4jwfA00

4JWJA 4JWHA 4FMWA 4JWFA 4JWGA
chains in the Genus database with same CATH superfamily

3N4JA 4L69A 4FMWA 1ZJRA 4KGNA 2QWVA 3N4KA 1GZ0A 4YQNA 3IEFA 4CNFA 4YQDA 5CO4A 4CNEA 4YQ2A 3L8UA 1TO0A 4JAKA 2YY8A 4XBOA 2I6DA 4H3ZA 3OINA 4J3CA 4YVHA 3OIIA 4YPWA 4YPXA 1IPAA 4YQ9A 3AXZA 5D9FA 3KTYA 4YQRA 4YPZA 4YQ4A 2V3JA 4MCCA 3ILKA 4YQLA 1J85A 4PZKA 4YQOA 2EGWA 1UAKA 3NK6A 4YQJA 4YQBA 3GYQA 4YVIA 3QUVA 3OIJA 4YQ7A 4YQ3A 2Z0YA 4X3MA 1VHKA 5GMCA 4YVKA 2V3KA 1V2XA 4E8BA 3NK7A 4YQPA 5GM8A 1O6DA 4JWJA 1NS5A 4YQIA 2QMMA 3KY7A 3BBEA 1NXZA 3ONPA 3KW2A 4YQ8A 4YQQA 1VH0A 1X7PA 3AIAA 4JALA 3BBHA 3E5YA 4X3LA 3IC6A 2EGVA 3DCMX 1K3RA 4YQ5A 4YQAA 1MXIA 1UALA 1VHYA 4YQ0A 1UAMA 1Z85A 4YQSA 3AI9X 4JWGA 5FAIA 4JWHA 1P9PA 1UAJA 1X7OA 4RG1A 4YQ6A 4YQ1A 1OY5A 4H3YA 3BBDA 5GMBA 4YVGA 2CX8A 4JWFA 1V6ZA 4YPYA 4YQCA 2HA8A 4MCDA 4MCBA 4YQTA 4KDZA 4CNGA 3O7BA 4IG6A 3KNUA 4YQKA 2O3AA 4FAKA 4YQGA 4YVJA 4CNDA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4JWJ A;  4JWH A;  4FMW A;  4JWF A;  4JWG A; 
#chains in the Genus database with same CATH topology
 3N4J A;  4L69 A;  4FMW A;  1ZJR A;  4KGN A;  2QWV A;  3N4K A;  1GZ0 A;  4YQN A;  3IEF A;  4CNF A;  4YQD A;  5CO4 A;  4CNE A;  4YQ2 A;  3L8U A;  1TO0 A;  4JAK A;  2YY8 A;  4XBO A;  2I6D A;  4H3Z A;  3OIN A;  4J3C A;  4YVH A;  3OII A;  4YPW A;  4YPX A;  1IPA A;  4YQ9 A;  3AXZ A;  5D9F A;  3KTY A;  4YQR A;  4YPZ A;  4YQ4 A;  2V3J A;  4MCC A;  3ILK A;  4YQL A;  1J85 A;  4PZK A;  4YQO A;  2EGW A;  1UAK A;  3NK6 A;  4YQJ A;  4YQB A;  3GYQ A;  4YVI A;  3QUV A;  3OIJ A;  4YQ7 A;  4YQ3 A;  2Z0Y A;  4X3M A;  1VHK A;  5GMC A;  4YVK A;  2V3K A;  1V2X A;  4E8B A;  3NK7 A;  4YQP A;  5GM8 A;  1O6D A;  4JWJ A;  1NS5 A;  4YQI A;  2QMM A;  3KY7 A;  3BBE A;  1NXZ A;  3ONP A;  3KW2 A;  4YQ8 A;  4YQQ A;  1VH0 A;  1X7P A;  3AIA A;  4JAL A;  3BBH A;  3E5Y A;  4X3L A;  3IC6 A;  2EGV A;  3DCM X;  1K3R A;  4YQ5 A;  4YQA A;  1MXI A;  1UAL A;  1VHY A;  4YQ0 A;  1UAM A;  1Z85 A;  4YQS A;  3AI9 X;  4JWG A;  5FAI A;  4JWH A;  1P9P A;  1UAJ A;  1X7O A;  4RG1 A;  4YQ6 A;  4YQ1 A;  1OY5 A;  4H3Y A;  3BBD A;  5GMB A;  4YVG A;  2CX8 A;  4JWF A;  1V6Z A;  4YPY A;  4YQC A;  2HA8 A;  4MCD A;  4MCB A;  4YQT A;  4KDZ A;  4CNG A;  3O7B A;  4IG6 A;  3KNU A;  4YQK A;  2O3A A;  4FAK A;  4YQG A;  4YVJ A;  4CND A; 
#chains in the Genus database with same CATH homology
 3N4J A;  4L69 A;  4FMW A;  1ZJR A;  4KGN A;  2QWV A;  3N4K A;  1GZ0 A;  4YQN A;  3IEF A;  4CNF A;  4YQD A;  5CO4 A;  4CNE A;  4YQ2 A;  3L8U A;  1TO0 A;  4JAK A;  2YY8 A;  4XBO A;  2I6D A;  4H3Z A;  3OIN A;  4J3C A;  4YVH A;  3OII A;  4YPW A;  4YPX A;  1IPA A;  4YQ9 A;  3AXZ A;  5D9F A;  3KTY A;  4YQR A;  4YPZ A;  4YQ4 A;  2V3J A;  4MCC A;  3ILK A;  4YQL A;  1J85 A;  4PZK A;  4YQO A;  2EGW A;  1UAK A;  3NK6 A;  4YQJ A;  4YQB A;  3GYQ A;  4YVI A;  3QUV A;  3OIJ A;  4YQ7 A;  4YQ3 A;  2Z0Y A;  4X3M A;  1VHK A;  5GMC A;  4YVK A;  2V3K A;  1V2X A;  4E8B A;  3NK7 A;  4YQP A;  5GM8 A;  1O6D A;  4JWJ A;  1NS5 A;  4YQI A;  2QMM A;  3KY7 A;  3BBE A;  1NXZ A;  3ONP A;  3KW2 A;  4YQ8 A;  4YQQ A;  1VH0 A;  1X7P A;  3AIA A;  4JAL A;  3BBH A;  3E5Y A;  4X3L A;  3IC6 A;  2EGV A;  3DCM X;  1K3R A;  4YQ5 A;  4YQA A;  1MXI A;  1UAL A;  1VHY A;  4YQ0 A;  1UAM A;  1Z85 A;  4YQS A;  3AI9 X;  4JWG A;  5FAI A;  4JWH A;  1P9P A;  1UAJ A;  1X7O A;  4RG1 A;  4YQ6 A;  4YQ1 A;  1OY5 A;  4H3Y A;  3BBD A;  5GMB A;  4YVG A;  2CX8 A;  4JWF A;  1V6Z A;  4YPY A;  4YQC A;  2HA8 A;  4MCD A;  4MCB A;  4YQT A;  4KDZ A;  4CNG A;  3O7B A;  4IG6 A;  3KNU A;  4YQK A;  2O3A A;  4FAK A;  4YQG A;  4YVJ A;  4CND A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4JWFA

Total Genus

Knots found

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations