The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
7
|
sequence length |
55
|
structure length |
55
|
Chain Sequence |
MQKGNFRNQRKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element.
pubmed doi rcsb |
| molecule tags |
Viral protein/rna
|
| source organism |
Human immunodeficiency virus 1
|
| molecule keywords |
SL3 STEM-LOOP RNA
|
| total genus |
7
|
| structure length |
55
|
| sequence length |
55
|
| ec nomenclature | |
| pdb deposition date | 1997-12-15 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00098 | zf-CCHC | Zinc knuckle |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Few Secondary Structures | Irregular | HIV-1 Nucleocapsid Protein | Zinc finger, CCHC-type |
#chains in the Genus database with same CATH superfamily 1WWD A; 1Q3Z A; 1U6P A; 1AAF A; 1ESK A; 3NYB B; 3TS0 A; 3TS2 A; 1WWE A; 2CQF A; 2EC7 A; 1WWG A; 1BJ6 A; 1WWF A; 2LI8 A; 1Q3Y A; 3TRZ A; 2YSA A; 2L4L A; 1A6B B; 2M3Z A; 2IHX A; 1F6U A; 1A1T A; 2EXF A; 1MFS A; 2JZW A; #chains in the Genus database with same CATH topology 1WWD A; 1Q3Z A; 1U6P A; 1AAF A; 1ESK A; 3NYB B; 3TS0 A; 3TS2 A; 1WWE A; 2CQF A; 2EC7 A; 1WWG A; 1BJ6 A; 1WWF A; 2LI8 A; 1Q3Y A; 3TRZ A; 2YSA A; 2L4L A; 1A6B B; 2M3Z A; 2IHX A; 1F6U A; 1A1T A; 2EXF A; 1MFS A; 2JZW A; #chains in the Genus database with same CATH homology 1WWD A; 1Q3Z A; 1U6P A; 1AAF A; 1ESK A; 3NYB B; 3TS0 A; 3TS2 A; 1WWE A; 2CQF A; 2EC7 A; 1WWG A; 1BJ6 A; 1WWF A; 2LI8 A; 1Q3Y A; 3TRZ A; 2YSA A; 2L4L A; 1A6B B; 2M3Z A; 2IHX A; 1F6U A; 1A1T A; 2EXF A; 1MFS A; 2JZW A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
