1EZRA

Crystal structure of nucleoside hydrolase from leishmania major
Total Genus 99

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
312
structure length
312
Chain Sequence
PRKIILDCDPGIDDAVAIFLAHGNPEIELLAITTVVGNQSLEKVTQNARLVADVAGIVGVPVAAGCTKPLVRGVRNASHIHGETGMGNVSYPPEFKTKLDGRHAVQLIIDLIMSHEPKTITLVPTGGLTNIAMAVRLEPRIVDRVKEVVLMGGGYHTGNASPVAEFNVFIDPEAAHIVFNESWNVTMVGLDLTHLALATPAVQKRVREVGTKPAAFMLQILDFYTKVYEKEHDTYGKVHDPCAVAYVIDPTVMTTERVPVDIELNGALTTGMTVADFRYPRPKNCRTQVAVKLDFDKFWCLVIDALERIGDP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (25-28)S2 (28-35)S1 (3-9)AH4 (129-138)AH1 (13-24)S4 (122-125)TIV2 (58-61)TIV1 (37-40)AH2 (42-56)TVIII1 (38-41)TIV4 (81-84)TIV5 (84-87)TVIII2 (93-96)S3 (63-65)AH6 (167-171)TIV3 (70-73)AH7 (173-181)S8 (261-264)TIV7 (86-89)AH10 (213-228)TIV6 (85-88)TIV9 (117-120)AH5 (140-145)S5 (148-152)TI3 (162-165)TIV10 (159-162)TIV11 (160-163)TVIII3 (283-286)S10 (288-294)AH8 (191-195)AH12 (296-310)TIV12 (195-198)3H1 (230-232)TI4 (250-253)S7 (254-258)TIV16 (279-282)S9 (273-276)TIV14 (264-267)TIV15 (268-271)TII1 (270-273)TI6 (267-270)TIV8 (96-99)AH3 (105-115)S6 (186-189)AH11 (241-249)TI2 (155-158)AH9 (201-210)Updating...
connected with : NaN
publication title Nucleoside hydrolase from Leishmania major. Cloning, expression, catalytic properties, transition state inhibitors, and the 2.5-a crystal structure.
pubmed doi rcsb
molecule keywords NUCLEOSIDE HYDROLASE
molecule tags Hydrolase
source organism Leishmania major
total genus 99
structure length 312
sequence length 312
chains with identical sequence B, C, D
ec nomenclature ec 3.2.2.2: Inosine nucleosidase.
pdb deposition date 2000-05-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01156 IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.245.10 Alpha Beta Alpha-Beta Complex Inosine-uridine Nucleoside N-ribohydrolase; Chain A Ribonucleoside hydrolase-like 1ezrA00
4KL0A 4I71A 3EPWA 4I70A 2C40A 4I75A 4I72A 2FF2A 3T8IA 1KIEA 1HOZA 4P5FA 1HP0A 2YHGA 3MKMA 3B9XA 4I73A 4WR2A 4KPOA 2MASA 4KPNA 1R4FA 4I74A 1KICA 3EPXA 3T8JA 3FZ0A 3MKNA 1MASA 1EZRA 2FF1A 3G5IA 3B9GA 5TSQA 1Q8FA 1YOEA
chains in the Genus database with same CATH superfamily
4KL0A 4I71A 3EPWA 4I70A 2C40A 4I75A 4I72A 2FF2A 3T8IA 1KIEA 1HOZA 4P5FA 1HP0A 2YHGA 3MKMA 3B9XA 4I73A 4WR2A 4KPOA 2MASA 4KPNA 1R4FA 4I74A 1KICA 3EPXA 3T8JA 3FZ0A 3MKNA 1MASA 1EZRA 2FF1A 3G5IA 3B9GA 5TSQA 1Q8FA 1YOEA
chains in the Genus database with same CATH topology
4KL0A 4I71A 3EPWA 4I70A 2C40A 4I75A 4I72A 2FF2A 3T8IA 1KIEA 1HOZA 4P5FA 1HP0A 2YHGA 3MKMA 3B9XA 4I73A 4WR2A 4KPOA 2MASA 4KPNA 1R4FA 4I74A 1KICA 3EPXA 3T8JA 3FZ0A 3MKNA 1MASA 1EZRA 2FF1A 3G5IA 3B9GA 5TSQA 1Q8FA 1YOEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KL0 A;  4I71 A;  3EPW A;  4I70 A;  2C40 A;  4I75 A;  4I72 A;  2FF2 A;  3T8I A;  1KIE A;  1HOZ A;  4P5F A;  1HP0 A;  2YHG A;  3MKM A;  3B9X A;  4I73 A;  4WR2 A;  4KPO A;  2MAS A;  4KPN A;  1R4F A;  4I74 A;  1KIC A;  3EPX A;  3T8J A;  3FZ0 A;  3MKN A;  1MAS A;  1EZR A;  2FF1 A;  3G5I A;  3B9G A;  5TSQ A;  1Q8F A;  1YOE A; 
#chains in the Genus database with same CATH topology
 4KL0 A;  4I71 A;  3EPW A;  4I70 A;  2C40 A;  4I75 A;  4I72 A;  2FF2 A;  3T8I A;  1KIE A;  1HOZ A;  4P5F A;  1HP0 A;  2YHG A;  3MKM A;  3B9X A;  4I73 A;  4WR2 A;  4KPO A;  2MAS A;  4KPN A;  1R4F A;  4I74 A;  1KIC A;  3EPX A;  3T8J A;  3FZ0 A;  3MKN A;  1MAS A;  1EZR A;  2FF1 A;  3G5I A;  3B9G A;  5TSQ A;  1Q8F A;  1YOE A; 
#chains in the Genus database with same CATH homology
 4KL0 A;  4I71 A;  3EPW A;  4I70 A;  2C40 A;  4I75 A;  4I72 A;  2FF2 A;  3T8I A;  1KIE A;  1HOZ A;  4P5F A;  1HP0 A;  2YHG A;  3MKM A;  3B9X A;  4I73 A;  4WR2 A;  4KPO A;  2MAS A;  4KPN A;  1R4F A;  4I74 A;  1KIC A;  3EPX A;  3T8J A;  3FZ0 A;  3MKN A;  1MAS A;  1EZR A;  2FF1 A;  3G5I A;  3B9G A;  5TSQ A;  1Q8F A;  1YOE A; 
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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