1GGR | Genus

Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	23
sequence length	85
structure length	85
Chain Sequence	MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 85 atoms

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85 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transferase
source organism	Escherichia coli
publication title	Solution structure of the phosphoryl transfer complex between the signal transducing proteins HPr and IIA(glucose) of the Escherichia coli phosphoenolpyruvate:sugar phosphotransferase system. pubmed doi rcsb
molecule keywords	PTS SYSTEM, GLUCOSE-SPECIFIC IIA COMPONENT
total genus	23
structure length	85
sequence length	85
ec nomenclature
pdb deposition date	2000-09-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00381	PTS-HPr	PTS HPr component phosphorylation site

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1340.10	Alpha Beta	2-Layer Sandwich	Histidine-containing Protein; Chain: A;	HPr-like	1ggrB00

1Y4YA 2XDFC 1SPHA 2OENL 1CM2A 1QFRA 1JEMA 5T17A 2LRKD 1KA5A 1QR5A 1KKMH 2NZUL 1PTFA 1OPDA 1KKLH 3LE5A 1ZVVJ 3LFGA 1FU0A 3OQND 1PFHA 3OQMD 2HIDA 1RZRL 1MU4A 1MO1B 3LE1A 3OQOD 1Y51A 1CM3A 1TXEA 1GGRB 1Y50A 2FEPS 3LNWA 1VRCC 3EZAB 1K1CA 1HDNA 2HPRA 2LRLD 3EZBB 1POHA 1PCHA 5T1NA 1MO1A 3CCDA 2AK7A 3EZEB 3IHSA 3LE3A 4XWJB 5T1OA 2JELP 2RLZA 1J6TB 2NZVL
chains in the Genus database with same CATH superfamily

1Y4YA 2XDFC 1SPHA 2OENL 1CM2A 1QFRA 1JEMA 5T17A 2LRKD 1KA5A 1QR5A 1KKMH 2NZUL 1PTFA 1OPDA 1KKLH 3LE5A 1ZVVJ 3LFGA 1FU0A 3OQND 1PFHA 3OQMD 2HIDA 1RZRL 1MU4A 1MO1B 3LE1A 3OQOD 1Y51A 1CM3A 1TXEA 1GGRB 1Y50A 2FEPS 3LNWA 1VRCC 3EZAB 1K1CA 1HDNA 2HPRA 2LRLD 1J5YA 1POHA 3EZBB 1PCHA 5T1NA 1MO1A 3CCDA 2AK7A 3EZEB 3IHSA 3LE3A 4XWJB 5T1OA 2JELP 2RLZA 1J6TB 2NZVL
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1Y4Y A;  2XDF C;  1SPH A;  2OEN L;  1CM2 A;  1QFR A;  1JEM A;  5T17 A;  2LRK D;  1KA5 A;  1QR5 A;  1KKM H;  2NZU L;  1PTF A;  1OPD A;  1KKL H;  3LE5 A;  1ZVV J;  3LFG A;  1FU0 A;  3OQN D;  1PFH A;  3OQM D;  2HID A;  1RZR L;  1MU4 A;  1MO1 B;  3LE1 A;  3OQO D;  1Y51 A;  1CM3 A;  1TXE A;  1GGR B;  1Y50 A;  2FEP S;  3LNW A;  1VRC C;  3EZA B;  1K1C A;  1HDN A;  2HPR A;  2LRL D;  3EZB B;  1POH A;  1PCH A;  5T1N A;  1MO1 A;  3CCD A;  2AK7 A;  3EZE B;  3IHS A;  3LE3 A;  4XWJ B;  5T1O A;  2JEL P;  2RLZ A;  1J6T B;  2NZV L; 
#chains in the Genus database with same CATH topology
 1Y4Y A;  2XDF C;  1SPH A;  2OEN L;  1CM2 A;  1QFR A;  1JEM A;  5T17 A;  2LRK D;  1KA5 A;  1QR5 A;  1KKM H;  2NZU L;  1PTF A;  1OPD A;  1KKL H;  3LE5 A;  1ZVV J;  3LFG A;  1FU0 A;  3OQN D;  1PFH A;  3OQM D;  2HID A;  1RZR L;  1MU4 A;  1MO1 B;  3LE1 A;  3OQO D;  1Y51 A;  1CM3 A;  1TXE A;  1GGR B;  1Y50 A;  2FEP S;  3LNW A;  1VRC C;  3EZA B;  1K1C A;  1HDN A;  2HPR A;  2LRL D;  1J5Y A;  1POH A;  3EZB B;  1PCH A;  5T1N A;  1MO1 A;  3CCD A;  2AK7 A;  3EZE B;  3IHS A;  3LE3 A;  4XWJ B;  5T1O A;  2JEL P;  2RLZ A;  1J6T B;  2NZV L; 
#chains in the Genus database with same CATH homology
 1Y4Y A;  2XDF C;  1SPH A;  2OEN L;  1CM2 A;  1QFR A;  1JEM A;  5T17 A;  2LRK D;  1KA5 A;  1QR5 A;  1KKM H;  2NZU L;  1PTF A;  1OPD A;  1KKL H;  3LE5 A;  1ZVV J;  3LFG A;  1FU0 A;  3OQN D;  1PFH A;  3OQM D;  2HID A;  1RZR L;  1MU4 A;  1MO1 B;  3LE1 A;  3OQO D;  1Y51 A;  1CM3 A;  1TXE A;  1GGR B;  1Y50 A;  2FEP S;  3LNW A;  1VRC C;  3EZA B;  1K1C A;  1HDN A;  2HPR A;  2LRL D;  3EZB B;  1POH A;  1PCH A;  5T1N A;  1MO1 A;  3CCD A;  2AK7 A;  3EZE B;  3IHS A;  3LE3 A;  4XWJ B;  5T1O A;  2JEL P;  2RLZ A;  1J6T B;  2NZV L;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1GGRB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations