1J6T | Genus

Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	19
sequence length	85
structure length	85
Chain Sequence	MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5d2bbba9c922a64a87236b32/pdb.gz): 1862 ms

reading 85 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

85 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 20 ms

Adding embedded #jmolscript: select ({0:84});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transferase
source organism	Escherichia coli
publication title	Solution Structure of the Phosphoryl Transfer Complex between the Cytoplasmic A Domain of the Mannitol Transporter IImannitol and HPr of the Escherichia coli Phosphotransferase System pubmed doi rcsb
molecule keywords	PTS SYSTEM, MANNITOL-SPECIFIC IIABC COMPONENT
total genus	19
structure length	85
sequence length	85
ec nomenclature
pdb deposition date	2002-08-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00381	PTS-HPr	PTS HPr component phosphorylation site

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1340.10	Alpha Beta	2-Layer Sandwich	Histidine-containing Protein; Chain: A;	HPr-like	1j6tB00

2NZUL 2XDFC 3LE1A 1MU4A 3EZEB 1VRCC 1MO1A 1PCHA 2FEPS 2AK7A 3OQND 1RZRL 1QR5A 1J6TB 1TXEA 1CM2A 2OENL 3EZAB 1SPHA 1Y50A 1CM3A 1KKLH 1K1CA 1KA5A 2HPRA 1POHA 3IHSA 2RLZA 2JELP 3EZBB 3LE3A 1PFHA 3LFGA 3LNWA 1ZVVJ 3OQMD 1FU0A 2LRLD 1GGRB 1QFRA 3CCDA 4XWJB 1OPDA 5T17A 1PTFA 5T1NA 1HDNA 5T1OA 1Y4YA 2HIDA 3OQOD 2NZVL 1JEMA 2LRKD 3LE5A 1MO1B 1KKMH 1Y51A
chains in the Genus database with same CATH superfamily

2NZUL 2XDFC 3LE1A 1MU4A 3EZEB 1VRCC 1MO1A 1PCHA 2FEPS 2AK7A 1J5YA 3OQND 1QR5A 1RZRL 1J6TB 1TXEA 1CM2A 2OENL 3EZAB 1SPHA 1Y50A 1CM3A 1KKLH 1K1CA 1KA5A 2HPRA 1POHA 3IHSA 2RLZA 2JELP 3EZBB 3LE3A 1PFHA 3LFGA 3LNWA 1ZVVJ 3OQMD 1FU0A 2LRLD 1GGRB 1QFRA 3CCDA 4XWJB 1OPDA 5T17A 1PTFA 5T1NA 1HDNA 5T1OA 1Y4YA 2HIDA 3OQOD 2NZVL 1JEMA 2LRKD 3LE5A 1MO1B 1KKMH 1Y51A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2NZU L;  2XDF C;  3LE1 A;  1MU4 A;  3EZE B;  1VRC C;  1MO1 A;  1PCH A;  2FEP S;  2AK7 A;  3OQN D;  1RZR L;  1QR5 A;  1J6T B;  1TXE A;  1CM2 A;  2OEN L;  3EZA B;  1SPH A;  1Y50 A;  1CM3 A;  1KKL H;  1K1C A;  1KA5 A;  2HPR A;  1POH A;  3IHS A;  2RLZ A;  2JEL P;  3EZB B;  3LE3 A;  1PFH A;  3LFG A;  3LNW A;  1ZVV J;  3OQM D;  1FU0 A;  2LRL D;  1GGR B;  1QFR A;  3CCD A;  4XWJ B;  1OPD A;  5T17 A;  1PTF A;  5T1N A;  1HDN A;  5T1O A;  1Y4Y A;  2HID A;  3OQO D;  2NZV L;  1JEM A;  2LRK D;  3LE5 A;  1MO1 B;  1KKM H;  1Y51 A; 
#chains in the Genus database with same CATH topology
 2NZU L;  2XDF C;  3LE1 A;  1MU4 A;  3EZE B;  1VRC C;  1MO1 A;  1PCH A;  2FEP S;  2AK7 A;  1J5Y A;  3OQN D;  1QR5 A;  1RZR L;  1J6T B;  1TXE A;  1CM2 A;  2OEN L;  3EZA B;  1SPH A;  1Y50 A;  1CM3 A;  1KKL H;  1K1C A;  1KA5 A;  2HPR A;  1POH A;  3IHS A;  2RLZ A;  2JEL P;  3EZB B;  3LE3 A;  1PFH A;  3LFG A;  3LNW A;  1ZVV J;  3OQM D;  1FU0 A;  2LRL D;  1GGR B;  1QFR A;  3CCD A;  4XWJ B;  1OPD A;  5T17 A;  1PTF A;  5T1N A;  1HDN A;  5T1O A;  1Y4Y A;  2HID A;  3OQO D;  2NZV L;  1JEM A;  2LRK D;  3LE5 A;  1MO1 B;  1KKM H;  1Y51 A; 
#chains in the Genus database with same CATH homology
 2NZU L;  2XDF C;  3LE1 A;  1MU4 A;  3EZE B;  1VRC C;  1MO1 A;  1PCH A;  2FEP S;  2AK7 A;  3OQN D;  1RZR L;  1QR5 A;  1J6T B;  1TXE A;  1CM2 A;  2OEN L;  3EZA B;  1SPH A;  1Y50 A;  1CM3 A;  1KKL H;  1K1C A;  1KA5 A;  2HPR A;  1POH A;  3IHS A;  2RLZ A;  2JEL P;  3EZB B;  3LE3 A;  1PFH A;  3LFG A;  3LNW A;  1ZVV J;  3OQM D;  1FU0 A;  2LRL D;  1GGR B;  1QFR A;  3CCD A;  4XWJ B;  1OPD A;  5T17 A;  1PTF A;  5T1N A;  1HDN A;  5T1O A;  1Y4Y A;  2HID A;  3OQO D;  2NZV L;  1JEM A;  2LRK D;  3LE5 A;  1MO1 B;  1KKM H;  1Y51 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1J6TB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations