1KIEA

Inosine-adenosine-guanosine preferring nucleoside hydrolase from trypanosoma vivax: asp10ala mutant in complex with 3-deaza-adenosine
Total Genus 116

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
116
sequence length
327
structure length
315
Chain Sequence
SAKNVVLDHAGNLDDFVAMVLLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCLMHNNMNLPLFPIGKSAATAVNPFPKEWRCLAKNMDDMPILNIPENVELWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPVRSPYVQRFGEQTNFLLSILVGTMWAMCYAWDALTAAYVVDQKVANVDPVPIDVVVDKQPNEGATVRTDAENYPLTFVARNPEAEFFLDMLLRSARAC
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (3-9)TI1 (25-28)AH6 (140-156)AH2 (43-61)EMPTYTIV1 (38-41)AH1 (13-24)AH11 (233-244)S2 (29-36)AH3 (88-92)AH5 (117-127)S3 (68-70)S7 (274-284)TVIII1 (75-78)TIV2 (81-84)O1 (84-86)TVIII2 (128-131)S4 (132-136)S5 (158-164)AH7 (185-189)S6 (205-208)TI4 (176-179)AH8 (191-199)TII1 (200-203)TII2 (290-293)AH9 (210-214)TVIII3 (214-217)AH10 (220-224)S9 (304-311)3H2 (225-228)TI5 (229-232)AH13 (313-324)AH12 (259-269)TII3 (299-302)TI6 (288-291)3H3 (271-273)O2 (286-288)AH4 (99-114)3H1 (94-96)TI3 (167-170)S8 (293-296)Updating...
connected with : NaN
publication title Enzyme-substrate interactions in the purine-specific nucleoside hydrolase from Trypanosoma vivax.
pubmed doi rcsb
molecule keywords inosine-adenosine-guanosine preferring nucleoside hydrolase
molecule tags Hydrolase
source organism Trypanosoma vivax
total genus 116
structure length 315
sequence length 327
chains with identical sequence B
ec nomenclature ec 3.2.2.1: Purine nucleosidase.
pdb deposition date 2001-12-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01156 IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.245.10 Alpha Beta Alpha-Beta Complex Inosine-uridine Nucleoside N-ribohydrolase; Chain A Ribonucleoside hydrolase-like 1kieA00
4I75A 1R4FA 1KICA 2FF2A 1HOZA 3T8JA 4KL0A 4I74A 4I72A 4KPOA 3B9GA 3B9XA 2C40A 2FF1A 4I71A 2YHGA 3T8IA 1HP0A 1EZRA 1MASA 4I70A 1Q8FA 4KPNA 3MKMA 3EPXA 4WR2A 3MKNA 4P5FA 2MASA 5TSQA 1KIEA 3FZ0A 3G5IA 4I73A 3EPWA 1YOEA
chains in the Genus database with same CATH superfamily
4I75A 1R4FA 1KICA 2FF2A 1HOZA 3T8JA 4KL0A 4I74A 4I72A 4KPOA 3B9GA 3B9XA 2C40A 2FF1A 4I71A 2YHGA 3T8IA 1HP0A 1EZRA 1MASA 4I70A 1Q8FA 4KPNA 3MKMA 3EPXA 4WR2A 3MKNA 4P5FA 2MASA 5TSQA 1KIEA 3FZ0A 3G5IA 4I73A 3EPWA 1YOEA
chains in the Genus database with same CATH topology
4I75A 1R4FA 1KICA 2FF2A 1HOZA 3T8JA 4KL0A 4I74A 4I72A 4KPOA 3B9GA 3B9XA 2C40A 2FF1A 4I71A 2YHGA 3T8IA 1HP0A 1EZRA 1MASA 4I70A 1Q8FA 4KPNA 3MKMA 3EPXA 4WR2A 3MKNA 4P5FA 2MASA 5TSQA 1KIEA 3FZ0A 3G5IA 4I73A 3EPWA 1YOEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4I75 A;  1R4F A;  1KIC A;  2FF2 A;  1HOZ A;  3T8J A;  4KL0 A;  4I74 A;  4I72 A;  4KPO A;  3B9G A;  3B9X A;  2C40 A;  2FF1 A;  4I71 A;  2YHG A;  3T8I A;  1HP0 A;  1EZR A;  1MAS A;  4I70 A;  1Q8F A;  4KPN A;  3MKM A;  3EPX A;  4WR2 A;  3MKN A;  4P5F A;  2MAS A;  5TSQ A;  1KIE A;  3FZ0 A;  3G5I A;  4I73 A;  3EPW A;  1YOE A; 
#chains in the Genus database with same CATH topology
 4I75 A;  1R4F A;  1KIC A;  2FF2 A;  1HOZ A;  3T8J A;  4KL0 A;  4I74 A;  4I72 A;  4KPO A;  3B9G A;  3B9X A;  2C40 A;  2FF1 A;  4I71 A;  2YHG A;  3T8I A;  1HP0 A;  1EZR A;  1MAS A;  4I70 A;  1Q8F A;  4KPN A;  3MKM A;  3EPX A;  4WR2 A;  3MKN A;  4P5F A;  2MAS A;  5TSQ A;  1KIE A;  3FZ0 A;  3G5I A;  4I73 A;  3EPW A;  1YOE A; 
#chains in the Genus database with same CATH homology
 4I75 A;  1R4F A;  1KIC A;  2FF2 A;  1HOZ A;  3T8J A;  4KL0 A;  4I74 A;  4I72 A;  4KPO A;  3B9G A;  3B9X A;  2C40 A;  2FF1 A;  4I71 A;  2YHG A;  3T8I A;  1HP0 A;  1EZR A;  1MAS A;  4I70 A;  1Q8F A;  4KPN A;  3MKM A;  3EPX A;  4WR2 A;  3MKN A;  4P5F A;  2MAS A;  5TSQ A;  1KIE A;  3FZ0 A;  3G5I A;  4I73 A;  3EPW A;  1YOE A; 
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similar chains in the pdb database (?% sequence similarity)

 
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