1KKM | Genus

Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	25
sequence length	87
structure length	86
Chain Sequence	AQKTFKVTADSGIHARPATVLVQTASKYDADVNLEYNGKTVNLKIMGVMSLGIAKGAEITISASGADENDALNALEETMKSERLGE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 86 atoms

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86 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase,hydrolase/transport protein
source organism	Lactobacillus casei
publication title	X-ray structure of a bifunctional protein kinase in complex with its protein substrate HPr. pubmed doi rcsb
molecule keywords	HprK protein
total genus	25
structure length	86
sequence length	87
chains with identical sequence	I, J
ec nomenclature
pdb deposition date	2001-12-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
H	PF00381	PTS-HPr	PTS HPr component phosphorylation site

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1340.10	Alpha Beta	2-Layer Sandwich	Histidine-containing Protein; Chain: A;	HPr-like	1kkmH00

2LRKD 3LE5A 2OENL 1KKLH 1JEMA 1J6TB 1TXEA 1KKMH 1KA5A 1FU0A 3LNWA 3LE3A 2NZUL 3CCDA 3OQMD 1HDNA 3LE1A 2NZVL 3EZBB 5T1NA 1RZRL 2XDFC 1CM3A 1K1CA 1SPHA 3OQND 2HPRA 1MO1A 1QR5A 3EZEB 3IHSA 1PCHA 2LRLD 1Y4YA 1OPDA 1CM2A 2HIDA 5T1OA 1Y50A 1VRCC 1Y51A 2FEPS 1ZVVJ 1MU4A 2RLZA 3OQOD 1PFHA 3EZAB 3LFGA 1GGRB 1MO1B 2AK7A 4XWJB 5T17A 1PTFA 1POHA 2JELP 1QFRA
chains in the Genus database with same CATH superfamily

2LRKD 3LE5A 2OENL 1KKLH 1JEMA 1J6TB 1TXEA 1KKMH 1KA5A 1FU0A 3LNWA 3LE3A 2NZUL 3CCDA 3OQMD 1HDNA 3LE1A 2NZVL 3EZBB 5T1NA 1RZRL 2XDFC 1J5YA 1CM3A 1K1CA 1SPHA 3OQND 2HPRA 1MO1A 1QR5A 3EZEB 3IHSA 1PCHA 2LRLD 1Y4YA 1OPDA 1CM2A 2HIDA 5T1OA 1Y50A 1VRCC 1Y51A 2FEPS 1ZVVJ 1MU4A 2RLZA 3OQOD 1PFHA 3EZAB 3LFGA 1GGRB 1MO1B 2AK7A 4XWJB 5T17A 1PTFA 1POHA 2JELP 1QFRA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2LRK D;  3LE5 A;  2OEN L;  1KKL H;  1JEM A;  1J6T B;  1TXE A;  1KKM H;  1KA5 A;  1FU0 A;  3LNW A;  3LE3 A;  2NZU L;  3CCD A;  3OQM D;  1HDN A;  3LE1 A;  2NZV L;  3EZB B;  5T1N A;  1RZR L;  2XDF C;  1CM3 A;  1K1C A;  1SPH A;  3OQN D;  2HPR A;  1MO1 A;  1QR5 A;  3EZE B;  3IHS A;  1PCH A;  2LRL D;  1Y4Y A;  1OPD A;  1CM2 A;  2HID A;  5T1O A;  1Y50 A;  1VRC C;  1Y51 A;  2FEP S;  1ZVV J;  1MU4 A;  2RLZ A;  3OQO D;  1PFH A;  3EZA B;  3LFG A;  1GGR B;  1MO1 B;  2AK7 A;  4XWJ B;  5T17 A;  1PTF A;  1POH A;  2JEL P;  1QFR A; 
#chains in the Genus database with same CATH topology
 2LRK D;  3LE5 A;  2OEN L;  1KKL H;  1JEM A;  1J6T B;  1TXE A;  1KKM H;  1KA5 A;  1FU0 A;  3LNW A;  3LE3 A;  2NZU L;  3CCD A;  3OQM D;  1HDN A;  3LE1 A;  2NZV L;  3EZB B;  5T1N A;  1RZR L;  2XDF C;  1J5Y A;  1CM3 A;  1K1C A;  1SPH A;  3OQN D;  2HPR A;  1MO1 A;  1QR5 A;  3EZE B;  3IHS A;  1PCH A;  2LRL D;  1Y4Y A;  1OPD A;  1CM2 A;  2HID A;  5T1O A;  1Y50 A;  1VRC C;  1Y51 A;  2FEP S;  1ZVV J;  1MU4 A;  2RLZ A;  3OQO D;  1PFH A;  3EZA B;  3LFG A;  1GGR B;  1MO1 B;  2AK7 A;  4XWJ B;  5T17 A;  1PTF A;  1POH A;  2JEL P;  1QFR A; 
#chains in the Genus database with same CATH homology
 2LRK D;  3LE5 A;  2OEN L;  1KKL H;  1JEM A;  1J6T B;  1TXE A;  1KKM H;  1KA5 A;  1FU0 A;  3LNW A;  3LE3 A;  2NZU L;  3CCD A;  3OQM D;  1HDN A;  3LE1 A;  2NZV L;  3EZB B;  5T1N A;  1RZR L;  2XDF C;  1CM3 A;  1K1C A;  1SPH A;  3OQN D;  2HPR A;  1MO1 A;  1QR5 A;  3EZE B;  3IHS A;  1PCH A;  2LRL D;  1Y4Y A;  1OPD A;  1CM2 A;  2HID A;  5T1O A;  1Y50 A;  1VRC C;  1Y51 A;  2FEP S;  1ZVV J;  1MU4 A;  2RLZ A;  3OQO D;  1PFH A;  3EZA B;  3LFG A;  1GGR B;  1MO1 B;  2AK7 A;  4XWJ B;  5T17 A;  1PTF A;  1POH A;  2JEL P;  1QFR A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1KKMH

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations