1MASA

Purine nucleoside hydrolase
Total Genus 97

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
97
sequence length
314
structure length
308
Chain Sequence
AKKIILDCDPGLDDAVAILLAHGNPEIELLAITTVVGNQTLAKVTRNAQLVADIAGITGVPIAAGCDKPLVRKIMTESGMGTVAYPAEFKNKVDERHAVNLIIDLVMSHEPKTITLVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGYHEGNATSVAEFNIIIDPEAAHIVFNESWQVTMVGLDLTHQALATPPILQRVKEVDTNPARFMLEIMDYYTKIYQSNRYMAAAAVHDPCAVAYVIDPSVMTTERVPVDIELTGKLTLGMTVADFRNPRPEHCHTQVAVKLDFEKFWGLVLDALERIGDPQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (25-28)S1 (4-9)AH3 (105-115)S4 (121-125)AH1 (13-24)TIV9 (231-234)TIV5 (117-120)S2 (29-35)TIV2 (58-61)TIV1 (37-40)AH2 (42-56)TVIII1 (38-41)TII'1 (87-90)TVIII2 (93-96)S3 (63-65)TVIII3 (96-99)TI3 (162-165)TIV3 (70-73)AH6 (167-171)S7 (255-259)TIV4 (86-89)AH4 (129-138)AH5 (141-145)TIV6 (159-162)TVIII4 (235-238)S5 (148-152)TIV10 (265-268)TI2 (155-158)TIV7 (160-163)AH7 (173-181)TVIII5 (284-287)S6 (186-189)AH8 (191-195)TIV8 (230-233)O1 (196-198)AH12 (297-311)AH9 (201-209)AH10 (213-230)AH11 (242-250)TIV11 (280-283)3H1 (252-254)TI4 (268-271)S8 (262-265)TII1 (271-274)S10 (289-295)Updating...
connected with : NaN
publication title Three-dimensional structure of the inosine-uridine nucleoside N-ribohydrolase from Crithidia fasciculata.
pubmed doi rcsb
molecule keywords INOSINE-URIDINE NUCLEOSIDE N-RIBOHYDROLASE
molecule tags Hydrolase
source organism Crithidia fasciculata
total genus 97
structure length 308
sequence length 314
chains with identical sequence B
ec nomenclature ec 3.2.2.2: Inosine nucleosidase.
pdb deposition date 1995-12-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01156 IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.245.10 Alpha Beta Alpha-Beta Complex Inosine-uridine Nucleoside N-ribohydrolase; Chain A Ribonucleoside hydrolase-like 1masA00
3EPWA 4I73A 3FZ0A 4I72A 1KIEA 4KL0A 3T8JA 3EPXA 1KICA 3B9XA 2MASA 2FF1A 1MASA 4P5FA 4KPOA 3MKMA 5TSQA 3T8IA 1Q8FA 4KPNA 1EZRA 2FF2A 2YHGA 3MKNA 4I75A 4WR2A 1HOZA 4I74A 3B9GA 3G5IA 4I70A 4I71A 1HP0A 2C40A 1YOEA 1R4FA
chains in the Genus database with same CATH superfamily
3EPWA 4I73A 3FZ0A 4I72A 1KIEA 4KL0A 3T8JA 3EPXA 1KICA 3B9XA 2MASA 2FF1A 1MASA 4P5FA 4KPOA 3MKMA 5TSQA 3T8IA 1Q8FA 4KPNA 1EZRA 2FF2A 2YHGA 3MKNA 4I75A 4WR2A 1HOZA 4I74A 3B9GA 3G5IA 4I70A 4I71A 1HP0A 2C40A 1YOEA 1R4FA
chains in the Genus database with same CATH topology
3EPWA 4I73A 3FZ0A 4I72A 1KIEA 4KL0A 3T8JA 3EPXA 1KICA 3B9XA 2MASA 2FF1A 1MASA 4P5FA 4KPOA 3MKMA 5TSQA 3T8IA 1Q8FA 4KPNA 1EZRA 2FF2A 2YHGA 3MKNA 4I75A 4WR2A 1HOZA 4I74A 3B9GA 3G5IA 4I70A 4I71A 1HP0A 2C40A 1YOEA 1R4FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EPW A;  4I73 A;  3FZ0 A;  4I72 A;  1KIE A;  4KL0 A;  3T8J A;  3EPX A;  1KIC A;  3B9X A;  2MAS A;  2FF1 A;  1MAS A;  4P5F A;  4KPO A;  3MKM A;  5TSQ A;  3T8I A;  1Q8F A;  4KPN A;  1EZR A;  2FF2 A;  2YHG A;  3MKN A;  4I75 A;  4WR2 A;  1HOZ A;  4I74 A;  3B9G A;  3G5I A;  4I70 A;  4I71 A;  1HP0 A;  2C40 A;  1YOE A;  1R4F A; 
#chains in the Genus database with same CATH topology
 3EPW A;  4I73 A;  3FZ0 A;  4I72 A;  1KIE A;  4KL0 A;  3T8J A;  3EPX A;  1KIC A;  3B9X A;  2MAS A;  2FF1 A;  1MAS A;  4P5F A;  4KPO A;  3MKM A;  5TSQ A;  3T8I A;  1Q8F A;  4KPN A;  1EZR A;  2FF2 A;  2YHG A;  3MKN A;  4I75 A;  4WR2 A;  1HOZ A;  4I74 A;  3B9G A;  3G5I A;  4I70 A;  4I71 A;  1HP0 A;  2C40 A;  1YOE A;  1R4F A; 
#chains in the Genus database with same CATH homology
 3EPW A;  4I73 A;  3FZ0 A;  4I72 A;  1KIE A;  4KL0 A;  3T8J A;  3EPX A;  1KIC A;  3B9X A;  2MAS A;  2FF1 A;  1MAS A;  4P5F A;  4KPO A;  3MKM A;  5TSQ A;  3T8I A;  1Q8F A;  4KPN A;  1EZR A;  2FF2 A;  2YHG A;  3MKN A;  4I75 A;  4WR2 A;  1HOZ A;  4I74 A;  3B9G A;  3G5I A;  4I70 A;  4I71 A;  1HP0 A;  2C40 A;  1YOE A;  1R4F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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