1MAS | Genus

Total Genus 97

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	97
sequence length	314
structure length	308
Chain Sequence	AKKIILDCDPGLDDAVAILLAHGNPEIELLAITTVVGNQTLAKVTRNAQLVADIAGITGVPIAAGCDKPLVRKIMTESGMGTVAYPAEFKNKVDERHAVNLIIDLVMSHEPKTITLVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGYHEGNATSVAEFNIIIDPEAAHIVFNESWQVTMVGLDLTHQALATPPILQRVKEVDTNPARFMLEIMDYYTKIYQSNRYMAAAAVHDPCAVAYVIDPSVMTTERVPVDIELTGKLTLGMTVADFRNPRPEHCHTQVAVKLDFEKFWGLVLDALERIGDPQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 308 atoms

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308 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Three-dimensional structure of the inosine-uridine nucleoside N-ribohydrolase from Crithidia fasciculata. pubmed doi rcsb
molecule keywords	INOSINE-URIDINE NUCLEOSIDE N-RIBOHYDROLASE
molecule tags	Hydrolase
source organism	Crithidia fasciculata
total genus	97
structure length	308
sequence length	314
chains with identical sequence	B
ec nomenclature	ec 3.2.2.2: Inosine nucleosidase.
pdb deposition date	1995-12-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01156	IU_nuc_hydro	Inosine-uridine preferring nucleoside hydrolase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.245.10	Alpha Beta	Alpha-Beta Complex	Inosine-uridine Nucleoside N-ribohydrolase; Chain A	Ribonucleoside hydrolase-like	1masA00

3MKMA 4I72A 4I71A 4KL0A 1MASA 4I73A 3T8IA 3EPXA 2FF2A 4KPOA 3MKNA 3T8JA 4I70A 3B9XA 1YOEA 1Q8FA 4I74A 1KIEA 1HOZA 1KICA 3FZ0A 4I75A 2MASA 2YHGA 4KPNA 1EZRA 3G5IA 3B9GA 5TSQA 4WR2A 1R4FA 2FF1A 4P5FA 1HP0A 2C40A 3EPWA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3MKM A;  4I72 A;  4I71 A;  4KL0 A;  1MAS A;  4I73 A;  3T8I A;  3EPX A;  2FF2 A;  4KPO A;  3MKN A;  3T8J A;  4I70 A;  3B9X A;  1YOE A;  1Q8F A;  4I74 A;  1KIE A;  1HOZ A;  1KIC A;  3FZ0 A;  4I75 A;  2MAS A;  2YHG A;  4KPN A;  1EZR A;  3G5I A;  3B9G A;  5TSQ A;  4WR2 A;  1R4F A;  2FF1 A;  4P5F A;  1HP0 A;  2C40 A;  3EPW A; 
#chains in the Genus database with same CATH topology
 3MKM A;  4I72 A;  4I71 A;  4KL0 A;  1MAS A;  4I73 A;  3T8I A;  3EPX A;  2FF2 A;  4KPO A;  3MKN A;  3T8J A;  4I70 A;  3B9X A;  1YOE A;  1Q8F A;  4I74 A;  1KIE A;  1HOZ A;  1KIC A;  3FZ0 A;  4I75 A;  2MAS A;  2YHG A;  4KPN A;  1EZR A;  3G5I A;  3B9G A;  5TSQ A;  4WR2 A;  1R4F A;  2FF1 A;  4P5F A;  1HP0 A;  2C40 A;  3EPW A; 
#chains in the Genus database with same CATH homology
 3MKM A;  4I72 A;  4I71 A;  4KL0 A;  1MAS A;  4I73 A;  3T8I A;  3EPX A;  2FF2 A;  4KPO A;  3MKN A;  3T8J A;  4I70 A;  3B9X A;  1YOE A;  1Q8F A;  4I74 A;  1KIE A;  1HOZ A;  1KIC A;  3FZ0 A;  4I75 A;  2MAS A;  2YHG A;  4KPN A;  1EZR A;  3G5I A;  3B9G A;  5TSQ A;  4WR2 A;  1R4F A;  2FF1 A;  4P5F A;  1HP0 A;  2C40 A;  3EPW A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1MASA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations