1MAS | Genus

Total Genus 97

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	97
sequence length	314
structure length	308
Chain Sequence	AKKIILDCDPGLDDAVAILLAHGNPEIELLAITTVVGNQTLAKVTRNAQLVADIAGITGVPIAAGCDKPLVRKIMTESGMGTVAYPAEFKNKVDERHAVNLIIDLVMSHEPKTITLVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGYHEGNATSVAEFNIIIDPEAAHIVFNESWQVTMVGLDLTHQALATPPILQRVKEVDTNPARFMLEIMDYYTKIYQSNRYMAAAAVHDPCAVAYVIDPSVMTTERVPVDIELTGKLTLGMTVADFRNPRPEHCHTQVAVKLDFEKFWGLVLDALERIGDPQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 308 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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308 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Three-dimensional structure of the inosine-uridine nucleoside N-ribohydrolase from Crithidia fasciculata. pubmed doi rcsb
molecule keywords	INOSINE-URIDINE NUCLEOSIDE N-RIBOHYDROLASE
molecule tags	Hydrolase
source organism	Crithidia fasciculata
total genus	97
structure length	308
sequence length	314
chains with identical sequence	B
ec nomenclature	ec 3.2.2.2: Inosine nucleosidase.
pdb deposition date	1995-12-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01156	IU_nuc_hydro	Inosine-uridine preferring nucleoside hydrolase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.245.10	Alpha Beta	Alpha-Beta Complex	Inosine-uridine Nucleoside N-ribohydrolase; Chain A	Ribonucleoside hydrolase-like	1masA00

3EPWA 4I73A 3FZ0A 4I72A 1KIEA 4KL0A 3T8JA 3EPXA 1KICA 3B9XA 2MASA 2FF1A 1MASA 4P5FA 4KPOA 3MKMA 5TSQA 3T8IA 1Q8FA 4KPNA 1EZRA 2FF2A 2YHGA 3MKNA 4I75A 4WR2A 1HOZA 4I74A 3B9GA 3G5IA 4I70A 4I71A 1HP0A 2C40A 1YOEA 1R4FA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3EPW A;  4I73 A;  3FZ0 A;  4I72 A;  1KIE A;  4KL0 A;  3T8J A;  3EPX A;  1KIC A;  3B9X A;  2MAS A;  2FF1 A;  1MAS A;  4P5F A;  4KPO A;  3MKM A;  5TSQ A;  3T8I A;  1Q8F A;  4KPN A;  1EZR A;  2FF2 A;  2YHG A;  3MKN A;  4I75 A;  4WR2 A;  1HOZ A;  4I74 A;  3B9G A;  3G5I A;  4I70 A;  4I71 A;  1HP0 A;  2C40 A;  1YOE A;  1R4F A; 
#chains in the Genus database with same CATH topology
 3EPW A;  4I73 A;  3FZ0 A;  4I72 A;  1KIE A;  4KL0 A;  3T8J A;  3EPX A;  1KIC A;  3B9X A;  2MAS A;  2FF1 A;  1MAS A;  4P5F A;  4KPO A;  3MKM A;  5TSQ A;  3T8I A;  1Q8F A;  4KPN A;  1EZR A;  2FF2 A;  2YHG A;  3MKN A;  4I75 A;  4WR2 A;  1HOZ A;  4I74 A;  3B9G A;  3G5I A;  4I70 A;  4I71 A;  1HP0 A;  2C40 A;  1YOE A;  1R4F A; 
#chains in the Genus database with same CATH homology
 3EPW A;  4I73 A;  3FZ0 A;  4I72 A;  1KIE A;  4KL0 A;  3T8J A;  3EPX A;  1KIC A;  3B9X A;  2MAS A;  2FF1 A;  1MAS A;  4P5F A;  4KPO A;  3MKM A;  5TSQ A;  3T8I A;  1Q8F A;  4KPN A;  1EZR A;  2FF2 A;  2YHG A;  3MKN A;  4I75 A;  4WR2 A;  1HOZ A;  4I74 A;  3B9G A;  3G5I A;  4I70 A;  4I71 A;  1HP0 A;  2C40 A;  1YOE A;  1R4F A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1MASA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations