1MFSA

Dynamical behavior of the hiv-1 nucleocapsid protein; nmr, 30 structures
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
55
structure length
55
Chain Sequence
MQKGNFRNQRKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
source organism Human immunodeficiency virus
publication title Dynamical behavior of the HIV-1 nucleocapsid protein.
pubmed doi rcsb
molecule keywords HIV-1 NUCLEOCAPSID PROTEIN
total genus 3
structure length 55
sequence length 55
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 1998-04-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00098 zf-CCHC Zinc knuckle
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.60.10 Few Secondary Structures Irregular HIV-1 Nucleocapsid Protein Zinc finger, CCHC-type 1mfsA00
1MFSA 1U6PA 2IHXA 1A1TA 1WWDA 2M3ZA 1Q3YA 2YSAA 2JZWA 2L4LA 2EC7A 1WWGA 3TS2A 1WWEA 1WWFA 2EXFA 2CQFA 1AAFA 3TRZA 3NYBB 3TS0A 1Q3ZA 2LI8A 1BJ6A 1F6UA 1A6BB 1ESKA
chains in the Genus database with same CATH superfamily
1MFSA 1U6PA 2IHXA 1A1TA 1WWDA 2M3ZA 1Q3YA 2YSAA 2JZWA 2L4LA 2EC7A 1WWGA 3TS2A 1WWEA 1WWFA 2EXFA 2CQFA 1AAFA 3TRZA 3NYBB 3TS0A 1Q3ZA 2LI8A 1BJ6A 1F6UA 1A6BB 1ESKA
chains in the Genus database with same CATH topology
1MFSA 1U6PA 2IHXA 1A1TA 1WWDA 2M3ZA 1Q3YA 2YSAA 2JZWA 2L4LA 2EC7A 1WWGA 3TS2A 1WWEA 1WWFA 2EXFA 2CQFA 1AAFA 3TRZA 3NYBB 3TS0A 1Q3ZA 2LI8A 1BJ6A 1F6UA 1A6BB 1ESKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MFS A;  1U6P A;  2IHX A;  1A1T A;  1WWD A;  2M3Z A;  1Q3Y A;  2YSA A;  2JZW A;  2L4L A;  2EC7 A;  1WWG A;  3TS2 A;  1WWE A;  1WWF A;  2EXF A;  2CQF A;  1AAF A;  3TRZ A;  3NYB B;  3TS0 A;  1Q3Z A;  2LI8 A;  1BJ6 A;  1F6U A;  1A6B B;  1ESK A; 
#chains in the Genus database with same CATH topology
 1MFS A;  1U6P A;  2IHX A;  1A1T A;  1WWD A;  2M3Z A;  1Q3Y A;  2YSA A;  2JZW A;  2L4L A;  2EC7 A;  1WWG A;  3TS2 A;  1WWE A;  1WWF A;  2EXF A;  2CQF A;  1AAF A;  3TRZ A;  3NYB B;  3TS0 A;  1Q3Z A;  2LI8 A;  1BJ6 A;  1F6U A;  1A6B B;  1ESK A; 
#chains in the Genus database with same CATH homology
 1MFS A;  1U6P A;  2IHX A;  1A1T A;  1WWD A;  2M3Z A;  1Q3Y A;  2YSA A;  2JZW A;  2L4L A;  2EC7 A;  1WWG A;  3TS2 A;  1WWE A;  1WWF A;  2EXF A;  2CQF A;  1AAF A;  3TRZ A;  3NYB B;  3TS0 A;  1Q3Z A;  2LI8 A;  1BJ6 A;  1F6U A;  1A6B B;  1ESK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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