1NYNA

Solution nmr structure of protein yhr087w from saccharomyces cerevisiae. northeast structural genomics consortium target ytyst425.
Total Genus 12
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
111
structure length
111
Chain Sequence
MSTVTKYFYKGENTDLIVFAASEELVDEYLKNPSIGKLSEVVELFEVFTPQDGRGAEGELGAASKAQVENEFGKGKKIEEVIDLILRNGKPNSTTSSLKTKGGNAGTKAYN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title The Shwachman-Bodian-Diamond syndrome protein family is involved in RNA metabolism.
pubmed doi rcsb
molecule tags Structural genomics, unknown function
source organism Saccharomyces cerevisiae
molecule keywords Hypothetical 12.0 kDa protein in NAM8-GAR1 intergenic region
total genus 12
structure length 111
sequence length 111
ec nomenclature
pdb deposition date 2003-02-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01172 SBDS Shwachman-Bodian-Diamond syndrome (SBDS) protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1250.10 Alpha Beta 2-Layer Sandwich Hypothetical 12.0 Kda Protein In Nam8-gar1 Intergenic Region; Chain: A; Ribosome maturation protein SBDS, N-terminal domain 1nynA00
2WBMA 2KDOA 1P9QC 1NYNA 2L9NA 1T95A
chains in the Genus database with same CATH superfamily
2WBMA 2KDOA 1P9QC 1NYNA 2L9NA 1T95A
chains in the Genus database with same CATH topology
2WBMA 2KDOA 1P9QC 1NYNA 2L9NA 1T95A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WBM A;  2KDO A;  1P9Q C;  1NYN A;  2L9N A;  1T95 A; 
#chains in the Genus database with same CATH topology
 2WBM A;  2KDO A;  1P9Q C;  1NYN A;  2L9N A;  1T95 A; 
#chains in the Genus database with same CATH homology
 2WBM A;  2KDO A;  1P9Q C;  1NYN A;  2L9N A;  1T95 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...