The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
66
|
sequence length |
234
|
structure length |
234
|
Chain Sequence |
b'SHMVSLEDAVIARLESHGERFEVLVDPDLAAEFRREDSDVSVEDVLAVQEVFRDARKGDKASEEAMRKVFETADPLEVTPVILRRGTIQLTAEQRRQMIEDKRLKIINKIAREAINPQNGLPHPPKRIEKAMEEARVHVDPFKTVDEQVNIVLKAIRTKIPIKFEKVRVAIKIPGEMAGSAYGVISNFGKITNEEWQNDGSWIAVVEIPGGLQDSFYQKLSELTGGNVETRLIK'
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Conformational Flexibility and Molecular Interactions of an Archaeal Homologue of the Shwachman-Bodian-Diamond Syndrome Protein.
pubmed doi rcsb |
| molecule keywords |
RIBOSOME MATURATION PROTEIN SDO1 HOMOLOG
|
| source organism |
Methanothermobacter thermautotrophicus
|
| molecule tags |
Rna binding protein
|
| total genus |
66
|
| structure length |
234
|
| sequence length |
234
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2009-03-02 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01172 | SBDS | Shwachman-Bodian-Diamond syndrome (SBDS) protein |
| A | PF09377 | SBDS_C | SBDS protein C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Arc Repressor Mutant, subunit A | ||
| Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Alpha-Beta Plaits | ||
| Alpha Beta | 2-Layer Sandwich | Hypothetical 12.0 Kda Protein In Nam8-gar1 Intergenic Region; Chain: A; | Ribosome maturation protein SBDS, N-terminal domain |
