1OPD | Genus

Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	24
sequence length	85
structure length	85
Chain Sequence	MFEQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKDLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 85 atoms

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85 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Phosphotransferase
source organism	Escherichia coli
publication title	Mutation of serine-46 to aspartate in the histidine-containing protein of Escherichia coli mimics the inactivation by phosphorylation of serine-46 in HPrs from gram-positive bacteria. pubmed doi rcsb
molecule keywords	HISTIDINE-CONTAINING PROTEIN
total genus	24
structure length	85
sequence length	85
ec nomenclature
pdb deposition date	1996-08-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00381	PTS-HPr	PTS HPr component phosphorylation site

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1340.10	Alpha Beta	2-Layer Sandwich	Histidine-containing Protein; Chain: A;	HPr-like	1opdA00

1PTFA 1MO1A 2NZUL 2OENL 1Y50A 3EZAB 4XWJB 1PCHA 3LE1A 1Y51A 5T17A 5T1NA 1J6TB 3LNWA 3LE3A 1KKLH 1FU0A 3OQOD 3IHSA 1ZVVJ 2RLZA 2LRKD 1HDNA 2NZVL 3LFGA 3EZEB 1QFRA 1MO1B 2XDFC 1RZRL 1CM2A 2FEPS 1JEMA 1K1CA 1GGRB 5T1OA 1KA5A 2HIDA 3OQND 1QR5A 1TXEA 1PFHA 2JELP 1Y4YA 1POHA 1CM3A 1KKMH 3CCDA 1VRCC 1SPHA 2LRLD 2AK7A 3EZBB 1MU4A 1OPDA 2HPRA 3LE5A 3OQMD
chains in the Genus database with same CATH superfamily

1PTFA 1MO1A 2NZUL 2OENL 1Y50A 3EZAB 4XWJB 1PCHA 3LE1A 1Y51A 5T17A 5T1NA 1J6TB 3LNWA 3LE3A 1KKLH 1FU0A 3OQOD 3IHSA 1ZVVJ 2RLZA 2LRKD 1HDNA 2NZVL 3LFGA 3EZEB 1QFRA 1MO1B 2XDFC 1RZRL 1CM2A 2FEPS 1JEMA 1K1CA 1GGRB 5T1OA 1KA5A 2HIDA 3OQND 1QR5A 1TXEA 1PFHA 2JELP 1Y4YA 1POHA 1CM3A 1KKMH 3CCDA 1VRCC 1SPHA 2LRLD 1J5YA 2AK7A 3EZBB 1MU4A 1OPDA 2HPRA 3LE5A 3OQMD
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1PTF A;  1MO1 A;  2NZU L;  2OEN L;  1Y50 A;  3EZA B;  4XWJ B;  1PCH A;  3LE1 A;  1Y51 A;  5T17 A;  5T1N A;  1J6T B;  3LNW A;  3LE3 A;  1KKL H;  1FU0 A;  3OQO D;  3IHS A;  1ZVV J;  2RLZ A;  2LRK D;  1HDN A;  2NZV L;  3LFG A;  3EZE B;  1QFR A;  1MO1 B;  2XDF C;  1RZR L;  1CM2 A;  2FEP S;  1JEM A;  1K1C A;  1GGR B;  5T1O A;  1KA5 A;  2HID A;  3OQN D;  1QR5 A;  1TXE A;  1PFH A;  2JEL P;  1Y4Y A;  1POH A;  1CM3 A;  1KKM H;  3CCD A;  1VRC C;  1SPH A;  2LRL D;  2AK7 A;  3EZB B;  1MU4 A;  1OPD A;  2HPR A;  3LE5 A;  3OQM D; 
#chains in the Genus database with same CATH topology
 1PTF A;  1MO1 A;  2NZU L;  2OEN L;  1Y50 A;  3EZA B;  4XWJ B;  1PCH A;  3LE1 A;  1Y51 A;  5T17 A;  5T1N A;  1J6T B;  3LNW A;  3LE3 A;  1KKL H;  1FU0 A;  3OQO D;  3IHS A;  1ZVV J;  2RLZ A;  2LRK D;  1HDN A;  2NZV L;  3LFG A;  3EZE B;  1QFR A;  1MO1 B;  2XDF C;  1RZR L;  1CM2 A;  2FEP S;  1JEM A;  1K1C A;  1GGR B;  5T1O A;  1KA5 A;  2HID A;  3OQN D;  1QR5 A;  1TXE A;  1PFH A;  2JEL P;  1Y4Y A;  1POH A;  1CM3 A;  1KKM H;  3CCD A;  1VRC C;  1SPH A;  2LRL D;  1J5Y A;  2AK7 A;  3EZB B;  1MU4 A;  1OPD A;  2HPR A;  3LE5 A;  3OQM D; 
#chains in the Genus database with same CATH homology
 1PTF A;  1MO1 A;  2NZU L;  2OEN L;  1Y50 A;  3EZA B;  4XWJ B;  1PCH A;  3LE1 A;  1Y51 A;  5T17 A;  5T1N A;  1J6T B;  3LNW A;  3LE3 A;  1KKL H;  1FU0 A;  3OQO D;  3IHS A;  1ZVV J;  2RLZ A;  2LRK D;  1HDN A;  2NZV L;  3LFG A;  3EZE B;  1QFR A;  1MO1 B;  2XDF C;  1RZR L;  1CM2 A;  2FEP S;  1JEM A;  1K1C A;  1GGR B;  5T1O A;  1KA5 A;  2HID A;  3OQN D;  1QR5 A;  1TXE A;  1PFH A;  2JEL P;  1Y4Y A;  1POH A;  1CM3 A;  1KKM H;  3CCD A;  1VRC C;  1SPH A;  2LRL D;  2AK7 A;  3EZB B;  1MU4 A;  1OPD A;  2HPR A;  3LE5 A;  3OQM D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1OPDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations