1PTF | Genus

Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	26
sequence length	87
structure length	87
Chain Sequence	MEKKEFHIVAETGIHARPATLLVQTASKFNSDINLEYKGKSVNLKSIMGVMSLGVGQGSDVTITVDGADEAEGMAAIVETLQKEGLA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Phosphotransferase
source organism	Enterococcus faecalis
publication title	The 1.6 A structure of histidine-containing phosphotransfer protein HPr from Streptococcus faecalis. pubmed doi rcsb
molecule keywords	HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN HPR
total genus	26
structure length	87
sequence length	87
ec nomenclature
pdb deposition date	1993-10-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00381	PTS-HPr	PTS HPr component phosphorylation site

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1340.10	Alpha Beta	2-Layer Sandwich	Histidine-containing Protein; Chain: A;	HPr-like	1ptfA00

1MO1B 3EZAB 2JELP 1HDNA 2OENL 3LFGA 1CM2A 1MU4A 5T1OA 1PCHA 3OQND 1TXEA 4XWJB 1J6TB 1K1CA 1SPHA 1Y51A 1VRCC 1OPDA 1QFRA 2HIDA 2AK7A 1POHA 3LNWA 2XDFC 2NZVL 3LE3A 1Y50A 2HPRA 1Y4YA 3LE1A 3OQMD 1KA5A 2LRLD 2LRKD 1RZRL 1JEMA 1PFHA 1QR5A 3LE5A 1CM3A 3OQOD 2FEPS 1MO1A 3EZBB 2RLZA 1GGRB 5T17A 1KKLH 3IHSA 3CCDA 2NZUL 1PTFA 1ZVVJ 3EZEB 1FU0A 5T1NA 1KKMH
chains in the Genus database with same CATH superfamily

1MO1B 1J5YA 3EZAB 2JELP 1HDNA 2OENL 3LFGA 1CM2A 1MU4A 5T1OA 1PCHA 3OQND 1TXEA 4XWJB 1J6TB 1K1CA 1SPHA 1Y51A 1VRCC 1OPDA 1QFRA 2HIDA 2AK7A 1POHA 3LNWA 2XDFC 2NZVL 3LE3A 1Y50A 2HPRA 1Y4YA 3LE1A 3OQMD 1KA5A 2LRLD 2LRKD 1RZRL 1JEMA 1PFHA 1QR5A 3LE5A 1CM3A 3OQOD 2FEPS 1MO1A 3EZBB 2RLZA 1GGRB 5T17A 1KKLH 3IHSA 3CCDA 2NZUL 1PTFA 1ZVVJ 3EZEB 1FU0A 5T1NA 1KKMH
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1MO1 B;  3EZA B;  2JEL P;  1HDN A;  2OEN L;  3LFG A;  1CM2 A;  1MU4 A;  5T1O A;  1PCH A;  3OQN D;  1TXE A;  4XWJ B;  1J6T B;  1K1C A;  1SPH A;  1Y51 A;  1VRC C;  1OPD A;  1QFR A;  2HID A;  2AK7 A;  1POH A;  3LNW A;  2XDF C;  2NZV L;  3LE3 A;  1Y50 A;  2HPR A;  1Y4Y A;  3LE1 A;  3OQM D;  1KA5 A;  2LRL D;  2LRK D;  1RZR L;  1JEM A;  1PFH A;  1QR5 A;  3LE5 A;  1CM3 A;  3OQO D;  2FEP S;  1MO1 A;  3EZB B;  2RLZ A;  1GGR B;  5T17 A;  1KKL H;  3IHS A;  3CCD A;  2NZU L;  1PTF A;  1ZVV J;  3EZE B;  1FU0 A;  5T1N A;  1KKM H; 
#chains in the Genus database with same CATH topology
 1MO1 B;  1J5Y A;  3EZA B;  2JEL P;  1HDN A;  2OEN L;  3LFG A;  1CM2 A;  1MU4 A;  5T1O A;  1PCH A;  3OQN D;  1TXE A;  4XWJ B;  1J6T B;  1K1C A;  1SPH A;  1Y51 A;  1VRC C;  1OPD A;  1QFR A;  2HID A;  2AK7 A;  1POH A;  3LNW A;  2XDF C;  2NZV L;  3LE3 A;  1Y50 A;  2HPR A;  1Y4Y A;  3LE1 A;  3OQM D;  1KA5 A;  2LRL D;  2LRK D;  1RZR L;  1JEM A;  1PFH A;  1QR5 A;  3LE5 A;  1CM3 A;  3OQO D;  2FEP S;  1MO1 A;  3EZB B;  2RLZ A;  1GGR B;  5T17 A;  1KKL H;  3IHS A;  3CCD A;  2NZU L;  1PTF A;  1ZVV J;  3EZE B;  1FU0 A;  5T1N A;  1KKM H; 
#chains in the Genus database with same CATH homology
 1MO1 B;  3EZA B;  2JEL P;  1HDN A;  2OEN L;  3LFG A;  1CM2 A;  1MU4 A;  5T1O A;  1PCH A;  3OQN D;  1TXE A;  4XWJ B;  1J6T B;  1K1C A;  1SPH A;  1Y51 A;  1VRC C;  1OPD A;  1QFR A;  2HID A;  2AK7 A;  1POH A;  3LNW A;  2XDF C;  2NZV L;  3LE3 A;  1Y50 A;  2HPR A;  1Y4Y A;  3LE1 A;  3OQM D;  1KA5 A;  2LRL D;  2LRK D;  1RZR L;  1JEM A;  1PFH A;  1QR5 A;  3LE5 A;  1CM3 A;  3OQO D;  2FEP S;  1MO1 A;  3EZB B;  2RLZ A;  1GGR B;  5T17 A;  1KKL H;  3IHS A;  3CCD A;  2NZU L;  1PTF A;  1ZVV J;  3EZE B;  1FU0 A;  5T1N A;  1KKM H;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1PTFA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations