1QVEA

Crystal structure of the truncated k122-4 pilin from pseudomonas aeruginosa
Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
126
structure length
126
Chain Sequence
ISEFARAQLSEAMTLASGLKTKVSDIFSQDGSCPANTAATAGIEKDTDINGKYVAKVTTGGTAAASGGCTIVATMKASDVATPLRGKTLTLTLGNADKGSYTWACTSNADNKYLPKTCQTATTTTP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
Updating...
connected with : NaN
publication title Crystallographic Analysis of the Pseudomonas aeruginosa Strain K122-4 Monomeric Pilin Reveals a Conserved Receptor-Binding Architecture
pubmed doi rcsb
molecule tags Cell adhesion
source organism Pseudomonas aeruginosa
molecule keywords Fimbrial protein
total genus 35
structure length 126
sequence length 126
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-08-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00114 Pilin Pilin (bacterial filament)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.700.10 Alpha Beta 2-Layer Sandwich Glycoprotein, Type 4 Pilin Glycoprotein, Type 4 Pilin 1qveA00
3JYZA 1X6XX 1AY2A 1DZOA 3JZZA 1X6RA 1X6YA 2M7GA 1X6ZA 3SOKA 1HPWA 4LW9A 1T92A 2KEPA 3FU1A 1QVEA 2PY0A 2HI2A 5JW8A 1X6PA 2PILA 4V1JA 3GN9A 1OQWA 1RG0A 1X6QA 3G20A 3SOJA
chains in the Genus database with same CATH superfamily
3JYZA 1WSCA 1X6XX 1AY2A 3N6RA 1DZOA 3JZZA 1X6RA 1X6YA 2M7GA 3U9TA 3U9SA 1X6ZA 1VAJA 3SOKA 1HPWA 4LW9A 1T92A 2KEPA 3FU1A 1QVEA 2PY0A 2HI2A 5JW8A 1X6PA 2PILA 4V1JA 1ZQ7A 3GN9A 1OQWA 1RG0A 2M3KA 1X6QA 3G20A 3SOJA
chains in the Genus database with same CATH topology
3JYZA 1X6XX 1AY2A 3N6RA 1DZOA 3JZZA 1X6RA 1X6YA 2M7GA 3U9TA 3U9SA 1X6ZA 3SOKA 1HPWA 4LW9A 1T92A 2KEPA 3FU1A 1QVEA 2PY0A 2HI2A 5JW8A 1X6PA 2PILA 4V1JA 3GN9A 1OQWA 1RG0A 2M3KA 1X6QA 3G20A 3SOJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JYZ A;  1X6X X;  1AY2 A;  1DZO A;  3JZZ A;  1X6R A;  1X6Y A;  2M7G A;  1X6Z A;  3SOK A;  1HPW A;  4LW9 A;  1T92 A;  2KEP A;  3FU1 A;  1QVE A;  2PY0 A;  2HI2 A;  5JW8 A;  1X6P A;  2PIL A;  4V1J A;  3GN9 A;  1OQW A;  1RG0 A;  1X6Q A;  3G20 A;  3SOJ A; 
#chains in the Genus database with same CATH topology
 3JYZ A;  1WSC A;  1X6X X;  1AY2 A;  3N6R A;  1DZO A;  3JZZ A;  1X6R A;  1X6Y A;  2M7G A;  3U9T A;  3U9S A;  1X6Z A;  1VAJ A;  3SOK A;  1HPW A;  4LW9 A;  1T92 A;  2KEP A;  3FU1 A;  1QVE A;  2PY0 A;  2HI2 A;  5JW8 A;  1X6P A;  2PIL A;  4V1J A;  1ZQ7 A;  3GN9 A;  1OQW A;  1RG0 A;  2M3K A;  1X6Q A;  3G20 A;  3SOJ A; 
#chains in the Genus database with same CATH homology
 3JYZ A;  1X6X X;  1AY2 A;  3N6R A;  1DZO A;  3JZZ A;  1X6R A;  1X6Y A;  2M7G A;  3U9T A;  3U9S A;  1X6Z A;  3SOK A;  1HPW A;  4LW9 A;  1T92 A;  2KEP A;  3FU1 A;  1QVE A;  2PY0 A;  2HI2 A;  5JW8 A;  1X6P A;  2PIL A;  4V1J A;  3GN9 A;  1OQW A;  1RG0 A;  2M3K A;  1X6Q A;  3G20 A;  3SOJ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.