1T92 | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	108
structure length	108
Chain Sequence	GNKEKADRQKVVSDLVALEGALDMYKLDNSRYPTTEQGLQALVSAPSAEPHARNYPEGGYIRRLPQDPWGSDYQLLSPGQHGQVDIFSLGPDGVPESNDDIGNWTIGF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 108 atoms

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108 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein transport
source organism	Klebsiella pneumoniae
publication title	Structure and assembly of the pseudopilin PulG. pubmed doi rcsb
molecule keywords	General secretion pathway protein G
total genus	27
structure length	108
sequence length	108
chains with identical sequence	B
ec nomenclature
pdb deposition date	2004-05-14

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.700.10	Alpha Beta	2-Layer Sandwich	Glycoprotein, Type 4 Pilin	Glycoprotein, Type 4 Pilin	1t92A01

1X6QA 1AY2A 1RG0A 3FU1A 1X6ZA 1HPWA 1X6XX 3JZZA 1X6YA 1T92A 3G20A 3SOJA 3JYZA 2PY0A 1X6PA 1X6RA 2M7GA 1DZOA 2HI2A 2KEPA 1QVEA 3GN9A 1OQWA 3SOKA 4LW9A 2PILA 5JW8A 4V1JA
chains in the Genus database with same CATH superfamily

3N6RA 1X6QA 3U9SA 1AY2A 1RG0A 3FU1A 1X6ZA 1VAJA 1HPWA 1X6XX 3JZZA 1X6YA 1T92A 3G20A 3SOJA 3JYZA 2PY0A 2M3KA 1X6PA 1X6RA 2M7GA 1DZOA 2HI2A 2KEPA 1QVEA 3GN9A 1WSCA 3U9TA 1OQWA 1ZQ7A 3SOKA 4LW9A 2PILA 5JW8A 4V1JA
chains in the Genus database with same CATH topology

3N6RA 1X6QA 3U9SA 1AY2A 1RG0A 3FU1A 1X6ZA 1HPWA 1X6XX 3JZZA 1X6YA 1T92A 3G20A 3SOJA 3JYZA 2PY0A 2M3KA 1X6PA 1X6RA 2M7GA 1DZOA 2HI2A 2KEPA 1QVEA 3GN9A 3U9TA 1OQWA 3SOKA 4LW9A 2PILA 5JW8A 4V1JA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1X6Q A;  1AY2 A;  1RG0 A;  3FU1 A;  1X6Z A;  1HPW A;  1X6X X;  3JZZ A;  1X6Y A;  1T92 A;  3G20 A;  3SOJ A;  3JYZ A;  2PY0 A;  1X6P A;  1X6R A;  2M7G A;  1DZO A;  2HI2 A;  2KEP A;  1QVE A;  3GN9 A;  1OQW A;  3SOK A;  4LW9 A;  2PIL A;  5JW8 A;  4V1J A; 
#chains in the Genus database with same CATH topology
 3N6R A;  1X6Q A;  3U9S A;  1AY2 A;  1RG0 A;  3FU1 A;  1X6Z A;  1VAJ A;  1HPW A;  1X6X X;  3JZZ A;  1X6Y A;  1T92 A;  3G20 A;  3SOJ A;  3JYZ A;  2PY0 A;  2M3K A;  1X6P A;  1X6R A;  2M7G A;  1DZO A;  2HI2 A;  2KEP A;  1QVE A;  3GN9 A;  1WSC A;  3U9T A;  1OQW A;  1ZQ7 A;  3SOK A;  4LW9 A;  2PIL A;  5JW8 A;  4V1J A; 
#chains in the Genus database with same CATH homology
 3N6R A;  1X6Q A;  3U9S A;  1AY2 A;  1RG0 A;  3FU1 A;  1X6Z A;  1HPW A;  1X6X X;  3JZZ A;  1X6Y A;  1T92 A;  3G20 A;  3SOJ A;  3JYZ A;  2PY0 A;  2M3K A;  1X6P A;  1X6R A;  2M7G A;  1DZO A;  2HI2 A;  2KEP A;  1QVE A;  3GN9 A;  3U9T A;  1OQW A;  3SOK A;  4LW9 A;  2PIL A;  5JW8 A;  4V1J A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1T92A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN