1T92 | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	108
structure length	108
Chain Sequence	GNKEKADRQKVVSDLVALEGALDMYKLDNSRYPTTEQGLQALVSAPSAEPHARNYPEGGYIRRLPQDPWGSDYQLLSPGQHGQVDIFSLGPDGVPESNDDIGNWTIGF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 108 atoms

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108 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein transport
source organism	Klebsiella pneumoniae
publication title	Structure and assembly of the pseudopilin PulG. pubmed doi rcsb
molecule keywords	General secretion pathway protein G
total genus	27
structure length	108
sequence length	108
chains with identical sequence	B
ec nomenclature
pdb deposition date	2004-05-14

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.700.10	Alpha Beta	2-Layer Sandwich	Glycoprotein, Type 4 Pilin	Glycoprotein, Type 4 Pilin	1t92A01

2PY0A 3GN9A 3SOJA 2PILA 1X6YA 4LW9A 1QVEA 1HPWA 1AY2A 1X6XX 1T92A 3JZZA 3SOKA 2KEPA 3FU1A 1X6PA 1RG0A 2M7GA 1OQWA 3G20A 3JYZA 4V1JA 1X6QA 1X6RA 1X6ZA 2HI2A 5JW8A 1DZOA
chains in the Genus database with same CATH superfamily

2PY0A 3GN9A 3SOJA 1VAJA 2PILA 3N6RA 1X6YA 4LW9A 2M3KA 1QVEA 3U9TA 1HPWA 1AY2A 1X6XX 1T92A 3JZZA 3U9SA 3SOKA 2KEPA 3FU1A 1X6PA 1ZQ7A 1RG0A 2M7GA 1WSCA 1OQWA 3G20A 3JYZA 4V1JA 1X6QA 1X6RA 1X6ZA 2HI2A 5JW8A 1DZOA
chains in the Genus database with same CATH topology

2PY0A 3GN9A 3SOJA 2PILA 3N6RA 1X6YA 4LW9A 2M3KA 1QVEA 3U9TA 1HPWA 1AY2A 1X6XX 1T92A 3JZZA 3U9SA 3SOKA 2KEPA 3FU1A 1X6PA 1RG0A 2M7GA 1OQWA 3G20A 3JYZA 4V1JA 1X6QA 1X6RA 1X6ZA 2HI2A 5JW8A 1DZOA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2PY0 A;  3GN9 A;  3SOJ A;  2PIL A;  1X6Y A;  4LW9 A;  1QVE A;  1HPW A;  1AY2 A;  1X6X X;  1T92 A;  3JZZ A;  3SOK A;  2KEP A;  3FU1 A;  1X6P A;  1RG0 A;  2M7G A;  1OQW A;  3G20 A;  3JYZ A;  4V1J A;  1X6Q A;  1X6R A;  1X6Z A;  2HI2 A;  5JW8 A;  1DZO A; 
#chains in the Genus database with same CATH topology
 2PY0 A;  3GN9 A;  3SOJ A;  1VAJ A;  2PIL A;  3N6R A;  1X6Y A;  4LW9 A;  2M3K A;  1QVE A;  3U9T A;  1HPW A;  1AY2 A;  1X6X X;  1T92 A;  3JZZ A;  3U9S A;  3SOK A;  2KEP A;  3FU1 A;  1X6P A;  1ZQ7 A;  1RG0 A;  2M7G A;  1WSC A;  1OQW A;  3G20 A;  3JYZ A;  4V1J A;  1X6Q A;  1X6R A;  1X6Z A;  2HI2 A;  5JW8 A;  1DZO A; 
#chains in the Genus database with same CATH homology
 2PY0 A;  3GN9 A;  3SOJ A;  2PIL A;  3N6R A;  1X6Y A;  4LW9 A;  2M3K A;  1QVE A;  3U9T A;  1HPW A;  1AY2 A;  1X6X X;  1T92 A;  3JZZ A;  3U9S A;  3SOK A;  2KEP A;  3FU1 A;  1X6P A;  1RG0 A;  2M7G A;  1OQW A;  3G20 A;  3JYZ A;  4V1J A;  1X6Q A;  1X6R A;  1X6Z A;  2HI2 A;  5JW8 A;  1DZO A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1T92A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN