1U7GA

Crystal structure of ammonia channel amtb from e. coli
Total Genus 146
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
146
sequence length
383
structure length
383
Chain Sequence
AVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Probable ammonium transporter
publication title Mechanism of ammonia transport by Amt/MEP/Rh: structure of AmtB at 1.35 A
pubmed doi rcsb
source organism Escherichia coli
total genus 146
structure length 383
sequence length 383
ec nomenclature
pdb deposition date 2004-08-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3430.10 Mainly Alpha Orthogonal Bundle Ammonium transporter fold Ammonium transporter AmtB like domains 1u7gA00
3K3GA 1U7GA 3C1IA 2B2HA 2NPCA 3HD6A 2NPGA 5AEXA 3B9YA 2B2IA 3ME1A 1XQEA 5FUFA 5AF1A 1U77A 4EZDA 1U7CA 3BHSA 3B9ZA 2NOPA 3B9WA 2NPKA 3K3FA 3M6EA 2B2JA 1XQFA 3C1HA 4EZCA 5AH3A 2NOWA 2NS1A 2NPEA 2NUUA 2NMRA 5AIDA 2B2FA 5AEZA 4NH2A 3C1GA 2NPDA 2NPJA 3C1JA
chains in the Genus database with same CATH superfamily
3K3GA 1U7GA 3C1IA 2B2HA 2NPCA 3HD6A 2NPGA 5AEXA 3B9YA 2B2IA 3ME1A 1XQEA 5FUFA 5AF1A 1U77A 4EZDA 1U7CA 3BHSA 3B9ZA 2NOPA 3B9WA 2NPKA 3K3FA 3M6EA 2B2JA 1XQFA 3C1HA 4EZCA 5AH3A 2NOWA 2NS1A 2NPEA 2NUUA 2NMRA 5AIDA 2B2FA 5AEZA 4NH2A 3C1GA 2NPDA 2NPJA 3C1JA
chains in the Genus database with same CATH topology
3K3GA 1U7GA 3C1IA 2B2HA 2NPCA 3HD6A 2NPGA 5AEXA 3B9YA 2B2IA 3ME1A 1XQEA 5FUFA 5AF1A 1U77A 4EZDA 1U7CA 3BHSA 3B9ZA 2NOPA 3B9WA 2NPKA 3K3FA 3M6EA 2B2JA 1XQFA 3C1HA 4EZCA 5AH3A 2NOWA 2NS1A 2NPEA 2NUUA 2NMRA 5AIDA 2B2FA 5AEZA 4NH2A 3C1GA 2NPDA 2NPJA 3C1JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3K3G A;  1U7G A;  3C1I A;  2B2H A;  2NPC A;  3HD6 A;  2NPG A;  5AEX A;  3B9Y A;  2B2I A;  3ME1 A;  1XQE A;  5FUF A;  5AF1 A;  1U77 A;  4EZD A;  1U7C A;  3BHS A;  3B9Z A;  2NOP A;  3B9W A;  2NPK A;  3K3F A;  3M6E A;  2B2J A;  1XQF A;  3C1H A;  4EZC A;  5AH3 A;  2NOW A;  2NS1 A;  2NPE A;  2NUU A;  2NMR A;  5AID A;  2B2F A;  5AEZ A;  4NH2 A;  3C1G A;  2NPD A;  2NPJ A;  3C1J A; 
#chains in the Genus database with same CATH topology
 3K3G A;  1U7G A;  3C1I A;  2B2H A;  2NPC A;  3HD6 A;  2NPG A;  5AEX A;  3B9Y A;  2B2I A;  3ME1 A;  1XQE A;  5FUF A;  5AF1 A;  1U77 A;  4EZD A;  1U7C A;  3BHS A;  3B9Z A;  2NOP A;  3B9W A;  2NPK A;  3K3F A;  3M6E A;  2B2J A;  1XQF A;  3C1H A;  4EZC A;  5AH3 A;  2NOW A;  2NS1 A;  2NPE A;  2NUU A;  2NMR A;  5AID A;  2B2F A;  5AEZ A;  4NH2 A;  3C1G A;  2NPD A;  2NPJ A;  3C1J A; 
#chains in the Genus database with same CATH homology
 3K3G A;  1U7G A;  3C1I A;  2B2H A;  2NPC A;  3HD6 A;  2NPG A;  5AEX A;  3B9Y A;  2B2I A;  3ME1 A;  1XQE A;  5FUF A;  5AF1 A;  1U77 A;  4EZD A;  1U7C A;  3BHS A;  3B9Z A;  2NOP A;  3B9W A;  2NPK A;  3K3F A;  3M6E A;  2B2J A;  1XQF A;  3C1H A;  4EZC A;  5AH3 A;  2NOW A;  2NS1 A;  2NPE A;  2NUU A;  2NMR A;  5AID A;  2B2F A;  5AEZ A;  4NH2 A;  3C1G A;  2NPD A;  2NPJ A;  3C1J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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