1X6RA

Structure 5: room temperature crystal structure of the truncated pak pilin from pseudomonas aeruginosa at 1.80a resolution
Total Genus 37
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
120
structure length
120
Chain Sequence
GTEFARSEGASALASVNPLKTTVEEALSRGWSVKSGTGTEDATKKEVPLGVAADANKLGTIALKPDPADGTADITLTFTMGGAGPKNKGKIITLTRTAADGLWKCTSDQDEQFIPKGCSR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Pros and cons of cryocrystallography: should we also collect a room-temperature data set?
pubmed doi rcsb
molecule tags Structural protein
source organism Pseudomonas aeruginosa
molecule keywords Fimbrial protein
total genus 37
structure length 120
sequence length 120
ec nomenclature
pdb deposition date 2004-08-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00114 Pilin Pilin (bacterial filament)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.700.10 Alpha Beta 2-Layer Sandwich Glycoprotein, Type 4 Pilin Glycoprotein, Type 4 Pilin 1x6rA00
1HPWA 1X6QA 1AY2A 2M7GA 2KEPA 1X6YA 3JYZA 2PY0A 3SOJA 1RG0A 1X6XX 2HI2A 2PILA 1X6ZA 1DZOA 1QVEA 3G20A 1X6PA 3GN9A 1T92A 3FU1A 1X6RA 3JZZA 4LW9A 1OQWA 4V1JA 5JW8A 3SOKA
chains in the Genus database with same CATH superfamily
1HPWA 1X6QA 1AY2A 2M7GA 2KEPA 1X6YA 3N6RA 3JYZA 1ZQ7A 2PY0A 3SOJA 1RG0A 1X6XX 2HI2A 3U9SA 1X6ZA 2PILA 1DZOA 1QVEA 1WSCA 3G20A 1X6PA 3GN9A 1T92A 3FU1A 1X6RA 3JZZA 1VAJA 2M3KA 4LW9A 3U9TA 1OQWA 4V1JA 5JW8A 3SOKA
chains in the Genus database with same CATH topology
1HPWA 1X6QA 1AY2A 2M7GA 2KEPA 1X6YA 3N6RA 3JYZA 2PY0A 3SOJA 1RG0A 1X6XX 2HI2A 3U9SA 2PILA 1X6ZA 1DZOA 1QVEA 3G20A 1X6PA 3GN9A 1T92A 3FU1A 1X6RA 3JZZA 3U9TA 2M3KA 4LW9A 1OQWA 4V1JA 5JW8A 3SOKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HPW A;  1X6Q A;  1AY2 A;  2M7G A;  2KEP A;  1X6Y A;  3JYZ A;  2PY0 A;  3SOJ A;  1RG0 A;  1X6X X;  2HI2 A;  2PIL A;  1X6Z A;  1DZO A;  1QVE A;  3G20 A;  1X6P A;  3GN9 A;  1T92 A;  3FU1 A;  1X6R A;  3JZZ A;  4LW9 A;  1OQW A;  4V1J A;  5JW8 A;  3SOK A; 
#chains in the Genus database with same CATH topology
 1HPW A;  1X6Q A;  1AY2 A;  2M7G A;  2KEP A;  1X6Y A;  3N6R A;  3JYZ A;  1ZQ7 A;  2PY0 A;  3SOJ A;  1RG0 A;  1X6X X;  2HI2 A;  3U9S A;  1X6Z A;  2PIL A;  1DZO A;  1QVE A;  1WSC A;  3G20 A;  1X6P A;  3GN9 A;  1T92 A;  3FU1 A;  1X6R A;  3JZZ A;  1VAJ A;  2M3K A;  4LW9 A;  3U9T A;  1OQW A;  4V1J A;  5JW8 A;  3SOK A; 
#chains in the Genus database with same CATH homology
 1HPW A;  1X6Q A;  1AY2 A;  2M7G A;  2KEP A;  1X6Y A;  3N6R A;  3JYZ A;  2PY0 A;  3SOJ A;  1RG0 A;  1X6X X;  2HI2 A;  3U9S A;  2PIL A;  1X6Z A;  1DZO A;  1QVE A;  3G20 A;  1X6P A;  3GN9 A;  1T92 A;  3FU1 A;  1X6R A;  3JZZ A;  3U9T A;  2M3K A;  4LW9 A;  1OQW A;  4V1J A;  5JW8 A;  3SOK A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...