1X6XX

Structure 2: cryocolled crystal structure of the truncated pak pilin from pseudomonas aeruginosa at 0.95a resolution
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
119
structure length
119
Chain Sequence
TEFARSEGASALASVNPLKTTVEEALSRGWSVKSGTGTEDATKKEVPLGVAADANKLGTIALKPDPADGTADITLTFTMGGAGPKNKGKIITLTRTAADGLWKCTSDQDEQFIPKGCSR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Pros and cons of cryocrystallography: should we also collect a room-temperature data set?
pubmed doi rcsb
molecule tags Structural protein
source organism Pseudomonas aeruginosa
molecule keywords Fimbrial protein
total genus 35
structure length 119
sequence length 119
ec nomenclature
pdb deposition date 2004-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00114 Pilin Pilin (bacterial filament)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.700.10 Alpha Beta 2-Layer Sandwich Glycoprotein, Type 4 Pilin Glycoprotein, Type 4 Pilin 1x6xX00
1QVEA 5JW8A 4LW9A 4V1JA 1AY2A 3G20A 2PILA 2M7GA 3SOKA 1DZOA 3GN9A 3JZZA 1X6YA 2PY0A 2HI2A 1X6RA 2KEPA 1X6ZA 1X6QA 3SOJA 1RG0A 1T92A 1X6XX 1OQWA 3FU1A 1X6PA 3JYZA 1HPWA
chains in the Genus database with same CATH superfamily
1QVEA 5JW8A 4LW9A 4V1JA 1AY2A 3G20A 2PILA 2M7GA 3SOKA 1DZOA 3GN9A 3U9TA 3JZZA 1X6YA 2PY0A 3U9SA 2HI2A 1X6RA 2KEPA 1X6ZA 1X6QA 3SOJA 1RG0A 1T92A 1X6XX 1ZQ7A 2M3KA 1OQWA 3FU1A 1X6PA 1WSCA 3JYZA 3N6RA 1HPWA 1VAJA
chains in the Genus database with same CATH topology
1QVEA 5JW8A 4LW9A 4V1JA 1AY2A 3G20A 2PILA 2M7GA 3SOKA 1DZOA 3GN9A 3U9TA 3JZZA 1X6YA 2PY0A 3U9SA 2HI2A 1X6RA 2KEPA 1X6ZA 1X6QA 3SOJA 1RG0A 1T92A 1X6XX 2M3KA 1OQWA 3FU1A 1X6PA 3JYZA 3N6RA 1HPWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QVE A;  5JW8 A;  4LW9 A;  4V1J A;  1AY2 A;  3G20 A;  2PIL A;  2M7G A;  3SOK A;  1DZO A;  3GN9 A;  3JZZ A;  1X6Y A;  2PY0 A;  2HI2 A;  1X6R A;  2KEP A;  1X6Z A;  1X6Q A;  3SOJ A;  1RG0 A;  1T92 A;  1X6X X;  1OQW A;  3FU1 A;  1X6P A;  3JYZ A;  1HPW A; 
#chains in the Genus database with same CATH topology
 1QVE A;  5JW8 A;  4LW9 A;  4V1J A;  1AY2 A;  3G20 A;  2PIL A;  2M7G A;  3SOK A;  1DZO A;  3GN9 A;  3U9T A;  3JZZ A;  1X6Y A;  2PY0 A;  3U9S A;  2HI2 A;  1X6R A;  2KEP A;  1X6Z A;  1X6Q A;  3SOJ A;  1RG0 A;  1T92 A;  1X6X X;  1ZQ7 A;  2M3K A;  1OQW A;  3FU1 A;  1X6P A;  1WSC A;  3JYZ A;  3N6R A;  1HPW A;  1VAJ A; 
#chains in the Genus database with same CATH homology
 1QVE A;  5JW8 A;  4LW9 A;  4V1J A;  1AY2 A;  3G20 A;  2PIL A;  2M7G A;  3SOK A;  1DZO A;  3GN9 A;  3U9T A;  3JZZ A;  1X6Y A;  2PY0 A;  3U9S A;  2HI2 A;  1X6R A;  2KEP A;  1X6Z A;  1X6Q A;  3SOJ A;  1RG0 A;  1T92 A;  1X6X X;  2M3K A;  1OQW A;  3FU1 A;  1X6P A;  3JYZ A;  3N6R A;  1HPW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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