1Y51 | Genus

Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	28
sequence length	87
structure length	87
Chain Sequence	AEKTFKVVSDSGIHARPATILVQTASKWNSEIQLEYNGKTVNLKSIMGVMSLGIPKGATIKITAEGADAAEAMAALTDTLAKEGLAE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 87 atoms

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87 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transport protein
source organism	Geobacillus stearothermophilus
publication title	The HPr proteins from the thermophile Bacillus stearothermophilus can form domain-swapped dimers. pubmed doi rcsb
molecule keywords	Phosphocarrier protein HPr
total genus	28
structure length	87
sequence length	87
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2004-12-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00381	PTS-HPr	PTS HPr component phosphorylation site

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1340.10	Alpha Beta	2-Layer Sandwich	Histidine-containing Protein; Chain: A;	HPr-like	1y51A00

1POHA 1PCHA 1FU0A 3LE1A 1MU4A 3EZEB 3LFGA 3EZAB 3LNWA 1HDNA 2XDFC 1VRCC 3OQND 3CCDA 5T17A 1CM2A 1Y50A 2RLZA 1K1CA 1RZRL 1OPDA 1KKLH 1Y51A 1CM3A 2FEPS 1QR5A 2HPRA 1PTFA 2JELP 2OENL 3IHSA 5T1NA 1PFHA 2NZUL 1KKMH 2LRKD 1JEMA 2LRLD 3OQOD 1J6TB 1TXEA 3OQMD 3EZBB 1MO1B 2HIDA 1QFRA 1SPHA 1Y4YA 2AK7A 4XWJB 5T1OA 2NZVL 1ZVVJ 1KA5A 3LE3A 3LE5A 1MO1A 1GGRB
chains in the Genus database with same CATH superfamily

1POHA 1PCHA 1FU0A 3LE1A 1MU4A 3EZEB 3LFGA 3EZAB 3LNWA 1HDNA 2XDFC 1VRCC 3OQND 3CCDA 5T17A 1CM2A 1Y50A 2RLZA 1K1CA 1RZRL 1OPDA 1KKLH 1Y51A 1CM3A 2FEPS 1QR5A 2HPRA 1PTFA 2JELP 2OENL 3IHSA 5T1NA 1PFHA 2NZUL 1KKMH 2LRKD 1JEMA 2LRLD 3OQOD 1J6TB 1TXEA 3OQMD 3EZBB 1MO1B 2HIDA 1QFRA 1SPHA 1Y4YA 2AK7A 1J5YA 4XWJB 5T1OA 2NZVL 1ZVVJ 1KA5A 3LE3A 3LE5A 1MO1A 1GGRB
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1POH A;  1PCH A;  1FU0 A;  3LE1 A;  1MU4 A;  3EZE B;  3LFG A;  3EZA B;  3LNW A;  1HDN A;  2XDF C;  1VRC C;  3OQN D;  3CCD A;  5T17 A;  1CM2 A;  1Y50 A;  2RLZ A;  1K1C A;  1RZR L;  1OPD A;  1KKL H;  1Y51 A;  1CM3 A;  2FEP S;  1QR5 A;  2HPR A;  1PTF A;  2JEL P;  2OEN L;  3IHS A;  5T1N A;  1PFH A;  2NZU L;  1KKM H;  2LRK D;  1JEM A;  2LRL D;  3OQO D;  1J6T B;  1TXE A;  3OQM D;  3EZB B;  1MO1 B;  2HID A;  1QFR A;  1SPH A;  1Y4Y A;  2AK7 A;  4XWJ B;  5T1O A;  2NZV L;  1ZVV J;  1KA5 A;  3LE3 A;  3LE5 A;  1MO1 A;  1GGR B; 
#chains in the Genus database with same CATH topology
 1POH A;  1PCH A;  1FU0 A;  3LE1 A;  1MU4 A;  3EZE B;  3LFG A;  3EZA B;  3LNW A;  1HDN A;  2XDF C;  1VRC C;  3OQN D;  3CCD A;  5T17 A;  1CM2 A;  1Y50 A;  2RLZ A;  1K1C A;  1RZR L;  1OPD A;  1KKL H;  1Y51 A;  1CM3 A;  2FEP S;  1QR5 A;  2HPR A;  1PTF A;  2JEL P;  2OEN L;  3IHS A;  5T1N A;  1PFH A;  2NZU L;  1KKM H;  2LRK D;  1JEM A;  2LRL D;  3OQO D;  1J6T B;  1TXE A;  3OQM D;  3EZB B;  1MO1 B;  2HID A;  1QFR A;  1SPH A;  1Y4Y A;  2AK7 A;  1J5Y A;  4XWJ B;  5T1O A;  2NZV L;  1ZVV J;  1KA5 A;  3LE3 A;  3LE5 A;  1MO1 A;  1GGR B; 
#chains in the Genus database with same CATH homology
 1POH A;  1PCH A;  1FU0 A;  3LE1 A;  1MU4 A;  3EZE B;  3LFG A;  3EZA B;  3LNW A;  1HDN A;  2XDF C;  1VRC C;  3OQN D;  3CCD A;  5T17 A;  1CM2 A;  1Y50 A;  2RLZ A;  1K1C A;  1RZR L;  1OPD A;  1KKL H;  1Y51 A;  1CM3 A;  2FEP S;  1QR5 A;  2HPR A;  1PTF A;  2JEL P;  2OEN L;  3IHS A;  5T1N A;  1PFH A;  2NZU L;  1KKM H;  2LRK D;  1JEM A;  2LRL D;  3OQO D;  1J6T B;  1TXE A;  3OQM D;  3EZB B;  1MO1 B;  2HID A;  1QFR A;  1SPH A;  1Y4Y A;  2AK7 A;  4XWJ B;  5T1O A;  2NZV L;  1ZVV J;  1KA5 A;  3LE3 A;  3LE5 A;  1MO1 A;  1GGR B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1Y51A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations