2AK7 | Genus

Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	17
sequence length	86
structure length	85
Chain Sequence	MVQQKVEVRLKTGLQARPAALFVQEANRFTSDVFLEKDGKKVNAKIMGLMSLAVSTGTEVTLIAQGEDEQEALEKLAAYVQEEVL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transport protein
source organism	Bacillus subtilis
publication title	X-ray structure of a domain-swapped dimer of Ser46-phosphorylated Crh from Bacillus subtilis. pubmed doi rcsb
molecule keywords	HPr-like protein crh
total genus	17
structure length	85
sequence length	86
chains with identical sequence	B
ec nomenclature
pdb deposition date	2005-08-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00381	PTS-HPr	PTS HPr component phosphorylation site

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1340.10	Alpha Beta	2-Layer Sandwich	Histidine-containing Protein; Chain: A;	HPr-like	2ak7A00

2NZVL 1CM2A 2HIDA 1CM3A 1Y51A 2AK7A 1QFRA 1KKLH 1PTFA 1POHA 2XDFC 3LE1A 3LNWA 5T17A 1ZVVJ 1KA5A 1SPHA 1MU4A 3OQOD 4XWJB 1MO1A 1PFHA 2LRLD 2RLZA 3LE5A 1FU0A 5T1OA 3EZBB 3EZEB 1RZRL 1OPDA 1Y4YA 2FEPS 3EZAB 1Y50A 1JEMA 1J6TB 3LE3A 5T1NA 1PCHA 3OQMD 1MO1B 1K1CA 1GGRB 1TXEA 2OENL 3CCDA 3LFGA 1QR5A 3OQND 1HDNA 2JELP 3IHSA 2NZUL 1KKMH 2LRKD 2HPRA 1VRCC
chains in the Genus database with same CATH superfamily

2NZVL 1CM2A 2HIDA 1CM3A 1J5YA 1Y51A 2AK7A 1QFRA 1KKLH 1PTFA 1POHA 2XDFC 3LE1A 3LNWA 5T17A 1ZVVJ 1KA5A 1SPHA 1MU4A 3OQOD 4XWJB 1MO1A 1PFHA 2LRLD 2RLZA 3LE5A 1FU0A 5T1OA 3EZBB 3EZEB 1RZRL 1OPDA 1Y4YA 2FEPS 3EZAB 1Y50A 1JEMA 1J6TB 3LE3A 5T1NA 1PCHA 3OQMD 1MO1B 1K1CA 1GGRB 1TXEA 2OENL 3CCDA 3LFGA 1QR5A 3OQND 1HDNA 2JELP 3IHSA 2NZUL 1KKMH 2LRKD 2HPRA 1VRCC
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2NZV L;  1CM2 A;  2HID A;  1CM3 A;  1Y51 A;  2AK7 A;  1QFR A;  1KKL H;  1PTF A;  1POH A;  2XDF C;  3LE1 A;  3LNW A;  5T17 A;  1ZVV J;  1KA5 A;  1SPH A;  1MU4 A;  3OQO D;  4XWJ B;  1MO1 A;  1PFH A;  2LRL D;  2RLZ A;  3LE5 A;  1FU0 A;  5T1O A;  3EZB B;  3EZE B;  1RZR L;  1OPD A;  1Y4Y A;  2FEP S;  3EZA B;  1Y50 A;  1JEM A;  1J6T B;  3LE3 A;  5T1N A;  1PCH A;  3OQM D;  1MO1 B;  1K1C A;  1GGR B;  1TXE A;  2OEN L;  3CCD A;  3LFG A;  1QR5 A;  3OQN D;  1HDN A;  2JEL P;  3IHS A;  2NZU L;  1KKM H;  2LRK D;  2HPR A;  1VRC C; 
#chains in the Genus database with same CATH topology
 2NZV L;  1CM2 A;  2HID A;  1CM3 A;  1J5Y A;  1Y51 A;  2AK7 A;  1QFR A;  1KKL H;  1PTF A;  1POH A;  2XDF C;  3LE1 A;  3LNW A;  5T17 A;  1ZVV J;  1KA5 A;  1SPH A;  1MU4 A;  3OQO D;  4XWJ B;  1MO1 A;  1PFH A;  2LRL D;  2RLZ A;  3LE5 A;  1FU0 A;  5T1O A;  3EZB B;  3EZE B;  1RZR L;  1OPD A;  1Y4Y A;  2FEP S;  3EZA B;  1Y50 A;  1JEM A;  1J6T B;  3LE3 A;  5T1N A;  1PCH A;  3OQM D;  1MO1 B;  1K1C A;  1GGR B;  1TXE A;  2OEN L;  3CCD A;  3LFG A;  1QR5 A;  3OQN D;  1HDN A;  2JEL P;  3IHS A;  2NZU L;  1KKM H;  2LRK D;  2HPR A;  1VRC C; 
#chains in the Genus database with same CATH homology
 2NZV L;  1CM2 A;  2HID A;  1CM3 A;  1Y51 A;  2AK7 A;  1QFR A;  1KKL H;  1PTF A;  1POH A;  2XDF C;  3LE1 A;  3LNW A;  5T17 A;  1ZVV J;  1KA5 A;  1SPH A;  1MU4 A;  3OQO D;  4XWJ B;  1MO1 A;  1PFH A;  2LRL D;  2RLZ A;  3LE5 A;  1FU0 A;  5T1O A;  3EZB B;  3EZE B;  1RZR L;  1OPD A;  1Y4Y A;  2FEP S;  3EZA B;  1Y50 A;  1JEM A;  1J6T B;  3LE3 A;  5T1N A;  1PCH A;  3OQM D;  1MO1 B;  1K1C A;  1GGR B;  1TXE A;  2OEN L;  3CCD A;  3LFG A;  1QR5 A;  3OQN D;  1HDN A;  2JEL P;  3IHS A;  2NZU L;  1KKM H;  2LRK D;  2HPR A;  1VRC C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2AK7A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations