2C40A

Crystal structure of inosine-uridine preferring nucleoside hydrolase from bacillus anthracis at 2.2a resolution
Total Genus 106

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
310
structure length
302
Chain Sequence
MKKVYFNHDGGVDDLVSLFLLLQMDNVELTGVSVIPADCYLEPAMSASRKIIDRFGKNTIEVAASNSRGKNPFPKDWRMHAFYVDALPILNESGKVVTHVAAKPAHHHLIETLLQTEEKTTLLFTGPLTDLARALYEAPIIENKIKRLVWMGGTFRTAGNVHEPEHDGTAEWNSFWDPEAVARVWEANIEIDLITLESTNQVPLTIDIREQWAKERKYIGIDFLGQCYAIVPPLYYLWDVLTAAFVGKADLAKVQTINSIVHTYGPSQGRTVETDDGRPVHVVYDVNHDRFFDYITRLAKKV
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-8)TI1 (24-27)AH10 (246-255)AH4 (105-115)AH2 (41-55)AH1 (12-22)AH9 (219-230)S2 (27-34)AH11 (296-309)EMPTYAH3 (75-86)TIV1 (36-39)3H1 (88-90)S3 (61-64)S4 (99-100)TI2 (91-94)AH5 (128-137)3H2 (139-144)S5 (120-124)S6 (145-151)AH6 (172-176)S7 (191-194)TVIII2 (156-159)TII1 (163-166)S8 (261-270)AH7 (178-186)S9 (278-281)TI8 (282-285)TI3 (195-198)TI5 (197-200)TI4 (196-199)TI6 (199-202)AH8 (206-214)TIV3 (215-218)S10 (286-292)TIV4 (272-275)TII2 (275-278)TVIII1 (69-72)3H3 (257-259)Updating...
connected with : NaN
publication title Crystal Structure of Inosine-Uridine Preferring Nucleoside Hydrolase from Bacillus Anthracis at 2.2A Resolution
rcsb
molecule keywords INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE FAMILY PROTE
molecule tags Hydrolase
source organism Bacillus anthracis
total genus 106
structure length 302
sequence length 310
chains with identical sequence B
ec nomenclature ec 3.2.2.1: Purine nucleosidase.
pdb deposition date 2005-10-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01156 IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.245.10 Alpha Beta Alpha-Beta Complex Inosine-uridine Nucleoside N-ribohydrolase; Chain A Ribonucleoside hydrolase-like 2c40A00
3EPXA 1EZRA 1YOEA 4I70A 3MKNA 2MASA 2FF1A 3T8JA 2FF2A 1Q8FA 1KICA 4KPNA 3B9XA 1MASA 4I75A 4I72A 5TSQA 1HP0A 4WR2A 4I73A 4P5FA 4KPOA 4I71A 2YHGA 3B9GA 4I74A 1HOZA 3MKMA 1KIEA 3T8IA 2C40A 3G5IA 3EPWA 3FZ0A 4KL0A 1R4FA
chains in the Genus database with same CATH superfamily
3EPXA 1EZRA 1YOEA 4I70A 3MKNA 2MASA 2FF1A 3T8JA 2FF2A 1Q8FA 1KICA 4KPNA 3B9XA 1MASA 4I75A 4I72A 5TSQA 1HP0A 4WR2A 4I73A 4P5FA 4KPOA 4I71A 2YHGA 3B9GA 4I74A 1HOZA 3MKMA 1KIEA 3T8IA 2C40A 3G5IA 3EPWA 3FZ0A 4KL0A 1R4FA
chains in the Genus database with same CATH topology
3EPXA 1EZRA 1YOEA 4I70A 3MKNA 2MASA 2FF1A 3T8JA 2FF2A 1Q8FA 1KICA 4KPNA 3B9XA 1MASA 4I75A 4I72A 5TSQA 1HP0A 4WR2A 4I73A 4P5FA 4KPOA 4I71A 2YHGA 3B9GA 4I74A 1HOZA 3MKMA 1KIEA 3T8IA 2C40A 3G5IA 3EPWA 3FZ0A 4KL0A 1R4FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EPX A;  1EZR A;  1YOE A;  4I70 A;  3MKN A;  2MAS A;  2FF1 A;  3T8J A;  2FF2 A;  1Q8F A;  1KIC A;  4KPN A;  3B9X A;  1MAS A;  4I75 A;  4I72 A;  5TSQ A;  1HP0 A;  4WR2 A;  4I73 A;  4P5F A;  4KPO A;  4I71 A;  2YHG A;  3B9G A;  4I74 A;  1HOZ A;  3MKM A;  1KIE A;  3T8I A;  2C40 A;  3G5I A;  3EPW A;  3FZ0 A;  4KL0 A;  1R4F A; 
#chains in the Genus database with same CATH topology
 3EPX A;  1EZR A;  1YOE A;  4I70 A;  3MKN A;  2MAS A;  2FF1 A;  3T8J A;  2FF2 A;  1Q8F A;  1KIC A;  4KPN A;  3B9X A;  1MAS A;  4I75 A;  4I72 A;  5TSQ A;  1HP0 A;  4WR2 A;  4I73 A;  4P5F A;  4KPO A;  4I71 A;  2YHG A;  3B9G A;  4I74 A;  1HOZ A;  3MKM A;  1KIE A;  3T8I A;  2C40 A;  3G5I A;  3EPW A;  3FZ0 A;  4KL0 A;  1R4F A; 
#chains in the Genus database with same CATH homology
 3EPX A;  1EZR A;  1YOE A;  4I70 A;  3MKN A;  2MAS A;  2FF1 A;  3T8J A;  2FF2 A;  1Q8F A;  1KIC A;  4KPN A;  3B9X A;  1MAS A;  4I75 A;  4I72 A;  5TSQ A;  1HP0 A;  4WR2 A;  4I73 A;  4P5F A;  4KPO A;  4I71 A;  2YHG A;  3B9G A;  4I74 A;  1HOZ A;  3MKM A;  1KIE A;  3T8I A;  2C40 A;  3G5I A;  3EPW A;  3FZ0 A;  4KL0 A;  1R4F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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