2ETLA

Crystal structure of ubiquitin carboxy-terminal hydrolase l1 (uch-l1)
Total Genus 70

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
Knots found
sequence length
223
structure length
223
Chain Sequence
MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (10-20)S1 (26-30)TII2 (109-112)AH4 (113-121)TIV1 (23-26)S2 (46-54)TI5 (102-105)EMPTYO1 (158-160)AH2 (57-70)S3 (160-168)S4 (171-175)TI'1 (70-73)TI3 (72-75)S5 (183-187)TI4 (76-79)TIV6 (167-170)TI7 (176-179)AH3 (89-101)TIV4 (86-89)AH6 (137-148)TI6 (103-106)TIV5 (121-124)AH5 (126-135)TI8 (189-192)AH7 (193-207)TI9 (208-211)S6 (215-221)Updating...
connected with : NaN
publication title Structural basis for conformational plasticity of the Parkinson's disease-associated ubiquitin hydrolase UCH-L1.
pubmed doi rcsb
molecule tags Hydrolase, ligase
source organism Homo sapiens
molecule keywords Ubiquitin carboxyl-terminal hydrolase isozyme L1
total genus 70
structure length 223
sequence length 223
chains with identical sequence B
other databases KnotProt 2.0: K -52 -31 -31
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2005-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01088 Peptidase_C12 Ubiquitin carboxyl-terminal hydrolase, family 1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.532.10 Alpha Beta 3-Layer(aba) Sandwich Ubiquitin C-terminal Hydrolase UCH-l3 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 2etlA00
3KVFA 3IFWA 4UEMA 3IHRA 3KW5A 3RISA 3RIIA 4UELA 4DM9A 4I6NA 4IG7A 3TB3A 1CMXA 3A7SA 1XD3A 2LENA 1UCHA 3IRTA 2ETLA 4JKJA
chains in the Genus database with same CATH superfamily
3KVFA 3IFWA 4UEMA 3IHRA 3KW5A 3RISA 3RIIA 4UELA 4DM9A 4I6NA 4IG7A 3TB3A 1CMXA 3A7SA 1XD3A 2LENA 1UCHA 3IRTA 2ETLA 4JKJA
chains in the Genus database with same CATH topology
3KVFA 3IFWA 4UEMA 3IHRA 3KW5A 3RISA 3RIIA 4UELA 4DM9A 4I6NA 4IG7A 3TB3A 1CMXA 3A7SA 1XD3A 2LENA 1UCHA 3IRTA 2ETLA 4JKJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KVF A;  3IFW A;  4UEM A;  3IHR A;  3KW5 A;  3RIS A;  3RII A;  4UEL A;  4DM9 A;  4I6N A;  4IG7 A;  3TB3 A;  1CMX A;  3A7S A;  1XD3 A;  2LEN A;  1UCH A;  3IRT A;  2ETL A;  4JKJ A; 
#chains in the Genus database with same CATH topology
 3KVF A;  3IFW A;  4UEM A;  3IHR A;  3KW5 A;  3RIS A;  3RII A;  4UEL A;  4DM9 A;  4I6N A;  4IG7 A;  3TB3 A;  1CMX A;  3A7S A;  1XD3 A;  2LEN A;  1UCH A;  3IRT A;  2ETL A;  4JKJ A; 
#chains in the Genus database with same CATH homology
 3KVF A;  3IFW A;  4UEM A;  3IHR A;  3KW5 A;  3RIS A;  3RII A;  4UEL A;  4DM9 A;  4I6N A;  4IG7 A;  3TB3 A;  1CMX A;  3A7S A;  1XD3 A;  2LEN A;  1UCH A;  3IRT A;  2ETL A;  4JKJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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