2FF1A

Crystal structure of trypanosoma vivax nucleoside hydrolase soaked with immucillinh
Total Genus 112

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
sequence length
327
structure length
314
Chain Sequence
SAKNVVLDHDGNLDDFVAMVLLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCLMHNNMNLPLFPIGKSAATAVNPFPKEWRCLAKNMDDMPILNIPENVELWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPVRSPYVQRFGEQTNFLLSILVGTMWAMYAWDALTAAYVVDQKVANVDPVPIDVVVDKQPNEGATVRTDAENYPLTFVARNPEAEFFLDMLLRSARAC
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (3-9)TI1 (25-28)AH6 (140-156)AH2 (43-59)AH1 (13-24)S2 (29-36)EMPTYTIV1 (38-41)AH3 (81-92)TIV2 (39-42)AH4 (99-114)S3 (68-70)AH5 (117-127)TIV3 (75-78)S7 (275-284)TIV4 (128-131)S4 (132-136)S5 (158-164)AH7 (185-189)S6 (205-208)TIV5 (167-170)TI3 (176-179)AH12 (259-269)AH8 (191-199)TII1 (200-203)TI5 (288-291)TII2 (290-293)AH9 (210-214)TIV6 (214-217)AH10 (220-225)S9 (304-309)3H2 (226-228)TI4 (229-232)AH11 (233-244)TII3 (299-302)AH13 (313-324)3H1 (94-96)S8 (293-296)3H3 (271-273)Updating...
connected with : NaN
publication title Transition-state Complex of the Purine-specific Nucleoside Hydrolase of T.vivax: Enzyme Conformational Changes and Implications for Catalysis.
pubmed doi rcsb
molecule keywords IAG-nucleoside hydrolase
molecule tags Hydrolase
source organism Trypanosoma vivax
total genus 112
structure length 314
sequence length 327
chains with identical sequence B
ec nomenclature ec 3.2.2.1: Purine nucleosidase.
pdb deposition date 2005-12-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01156 IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.245.10 Alpha Beta Alpha-Beta Complex Inosine-uridine Nucleoside N-ribohydrolase; Chain A Ribonucleoside hydrolase-like 2ff1A00
3T8JA 3B9GA 3EPXA 1Q8FA 2YHGA 2FF2A 3MKMA 2MASA 1EZRA 3T8IA 1MASA 2FF1A 4I74A 4KPOA 3MKNA 4P5FA 5TSQA 2C40A 1R4FA 1KIEA 1YOEA 4KL0A 4I73A 3G5IA 1HOZA 3B9XA 4KPNA 1HP0A 3EPWA 3FZ0A 4I71A 1KICA 4I70A 4I75A 4WR2A 4I72A
chains in the Genus database with same CATH superfamily
3T8JA 3B9GA 3EPXA 1Q8FA 2YHGA 2FF2A 3MKMA 2MASA 1EZRA 3T8IA 1MASA 2FF1A 4I74A 4KPOA 3MKNA 4P5FA 5TSQA 2C40A 1R4FA 1KIEA 1YOEA 4KL0A 4I73A 3G5IA 1HOZA 3B9XA 4KPNA 1HP0A 3EPWA 3FZ0A 4I71A 1KICA 4I70A 4I75A 4WR2A 4I72A
chains in the Genus database with same CATH topology
3T8JA 3B9GA 3EPXA 1Q8FA 2YHGA 2FF2A 3MKMA 2MASA 1EZRA 3T8IA 1MASA 2FF1A 4I74A 4KPOA 3MKNA 4P5FA 5TSQA 2C40A 1R4FA 1KIEA 1YOEA 4KL0A 4I73A 3G5IA 1HOZA 3B9XA 4KPNA 1HP0A 3EPWA 3FZ0A 4I71A 1KICA 4I70A 4I75A 4WR2A 4I72A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3T8J A;  3B9G A;  3EPX A;  1Q8F A;  2YHG A;  2FF2 A;  3MKM A;  2MAS A;  1EZR A;  3T8I A;  1MAS A;  2FF1 A;  4I74 A;  4KPO A;  3MKN A;  4P5F A;  5TSQ A;  2C40 A;  1R4F A;  1KIE A;  1YOE A;  4KL0 A;  4I73 A;  3G5I A;  1HOZ A;  3B9X A;  4KPN A;  1HP0 A;  3EPW A;  3FZ0 A;  4I71 A;  1KIC A;  4I70 A;  4I75 A;  4WR2 A;  4I72 A; 
#chains in the Genus database with same CATH topology
 3T8J A;  3B9G A;  3EPX A;  1Q8F A;  2YHG A;  2FF2 A;  3MKM A;  2MAS A;  1EZR A;  3T8I A;  1MAS A;  2FF1 A;  4I74 A;  4KPO A;  3MKN A;  4P5F A;  5TSQ A;  2C40 A;  1R4F A;  1KIE A;  1YOE A;  4KL0 A;  4I73 A;  3G5I A;  1HOZ A;  3B9X A;  4KPN A;  1HP0 A;  3EPW A;  3FZ0 A;  4I71 A;  1KIC A;  4I70 A;  4I75 A;  4WR2 A;  4I72 A; 
#chains in the Genus database with same CATH homology
 3T8J A;  3B9G A;  3EPX A;  1Q8F A;  2YHG A;  2FF2 A;  3MKM A;  2MAS A;  1EZR A;  3T8I A;  1MAS A;  2FF1 A;  4I74 A;  4KPO A;  3MKN A;  4P5F A;  5TSQ A;  2C40 A;  1R4F A;  1KIE A;  1YOE A;  4KL0 A;  4I73 A;  3G5I A;  1HOZ A;  3B9X A;  4KPN A;  1HP0 A;  3EPW A;  3FZ0 A;  4I71 A;  1KIC A;  4I70 A;  4I75 A;  4WR2 A;  4I72 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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