2FF2A

Crystal structure of trypanosoma vivax nucleoside hydrolase co-crystallized with immucillinh
Total Genus 122

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
sequence length
326
structure length
326
Chain Sequence
AKNVVLDHDGNLDDFVAMVLLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCLMHNNMNLPLFPIGKSAATAVNPFPKEWRCLAKNMDDMPILNIPENVELWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPVRSPYVQRFGEQTNFLLSILVGTMWAMCTHCELLRDGDGYYAWDALTAAYVVDQKVANVDPVPIDVVVDKQPNEGATVRTDAENYPLTFVARNPEAEFFLDMLLRSARAC
5010015020025030030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (25-28)AH6 (140-156)S1 (3-9)AH2 (43-59)AH1 (13-25)AH13 (260-269)S4 (132-136)AH14 (313-324)S2 (29-36)AH3 (81-92)TIV1 (38-41)S3 (68-70)3H1 (94-96)O1 (61-63)TI5 (288-291)TVIII1 (75-78)AH5 (117-127)TIV2 (128-131)S5 (158-164)AH7 (185-189)S8 (293-296)TIV3 (167-170)TI3 (176-179)AH8 (191-199)S7 (274-284)TII1 (200-203)AH9 (210-214)TIV4 (214-217)AH10 (220-224)3H2 (225-228)TI4 (229-232)AH11 (233-244)AH12 (247-252)3H3 (271-273)S9 (304-311)TII3 (299-302)TII2 (290-293)O2 (286-288)S6 (205-208)TI'1 (252-255)AH4 (99-113)Updating...
connected with : NaN
publication title Transition-state Complex of the Purine-specific Nucleoside Hydrolase of T.vivax: Enzyme Conformational Changes and Implications for Catalysis.
pubmed doi rcsb
molecule keywords IAG-nucleoside hydrolase
molecule tags Hydrolase
source organism Trypanosoma vivax
total genus 122
structure length 326
sequence length 326
chains with identical sequence B
ec nomenclature ec 3.2.2.1: Purine nucleosidase.
pdb deposition date 2005-12-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01156 IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.245.10 Alpha Beta Alpha-Beta Complex Inosine-uridine Nucleoside N-ribohydrolase; Chain A Ribonucleoside hydrolase-like 2ff2A00
2MASA 4I75A 2FF2A 4KPOA 4I70A 3EPXA 4I71A 5TSQA 3G5IA 2FF1A 4I72A 2C40A 3FZ0A 4P5FA 1HOZA 3EPWA 1R4FA 1MASA 1HP0A 3B9XA 2YHGA 3MKNA 1EZRA 4WR2A 3B9GA 3T8JA 1KIEA 4I74A 3T8IA 1Q8FA 3MKMA 1YOEA 1KICA 4KL0A 4KPNA 4I73A
chains in the Genus database with same CATH superfamily
2MASA 4I75A 2FF2A 4KPOA 4I70A 3EPXA 4I71A 5TSQA 3G5IA 2FF1A 4I72A 2C40A 3FZ0A 4P5FA 1HOZA 3EPWA 1R4FA 1MASA 1HP0A 3B9XA 2YHGA 3MKNA 1EZRA 4WR2A 3B9GA 3T8JA 1KIEA 4I74A 3T8IA 1Q8FA 3MKMA 1YOEA 1KICA 4KL0A 4KPNA 4I73A
chains in the Genus database with same CATH topology
2MASA 4I75A 2FF2A 4KPOA 4I70A 3EPXA 4I71A 5TSQA 3G5IA 2FF1A 4I72A 2C40A 3FZ0A 4P5FA 1HOZA 3EPWA 1R4FA 1MASA 1HP0A 3B9XA 2YHGA 3MKNA 1EZRA 4WR2A 3B9GA 3T8JA 1KIEA 4I74A 3T8IA 1Q8FA 3MKMA 1YOEA 1KICA 4KL0A 4KPNA 4I73A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MAS A;  4I75 A;  2FF2 A;  4KPO A;  4I70 A;  3EPX A;  4I71 A;  5TSQ A;  3G5I A;  2FF1 A;  4I72 A;  2C40 A;  3FZ0 A;  4P5F A;  1HOZ A;  3EPW A;  1R4F A;  1MAS A;  1HP0 A;  3B9X A;  2YHG A;  3MKN A;  1EZR A;  4WR2 A;  3B9G A;  3T8J A;  1KIE A;  4I74 A;  3T8I A;  1Q8F A;  3MKM A;  1YOE A;  1KIC A;  4KL0 A;  4KPN A;  4I73 A; 
#chains in the Genus database with same CATH topology
 2MAS A;  4I75 A;  2FF2 A;  4KPO A;  4I70 A;  3EPX A;  4I71 A;  5TSQ A;  3G5I A;  2FF1 A;  4I72 A;  2C40 A;  3FZ0 A;  4P5F A;  1HOZ A;  3EPW A;  1R4F A;  1MAS A;  1HP0 A;  3B9X A;  2YHG A;  3MKN A;  1EZR A;  4WR2 A;  3B9G A;  3T8J A;  1KIE A;  4I74 A;  3T8I A;  1Q8F A;  3MKM A;  1YOE A;  1KIC A;  4KL0 A;  4KPN A;  4I73 A; 
#chains in the Genus database with same CATH homology
 2MAS A;  4I75 A;  2FF2 A;  4KPO A;  4I70 A;  3EPX A;  4I71 A;  5TSQ A;  3G5I A;  2FF1 A;  4I72 A;  2C40 A;  3FZ0 A;  4P5F A;  1HOZ A;  3EPW A;  1R4F A;  1MAS A;  1HP0 A;  3B9X A;  2YHG A;  3MKN A;  1EZR A;  4WR2 A;  3B9G A;  3T8J A;  1KIE A;  4I74 A;  3T8I A;  1Q8F A;  3MKM A;  1YOE A;  1KIC A;  4KL0 A;  4KPN A;  4I73 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...