2HPR | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	87
structure length	86
Chain Sequence	AQKTFKVTADSGIHARPATVLVQTASKYDADVNLEYNGKTVNLKSIMGVVSLGIAKGAEITISASGADENDALNALEETMKEGLGE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cfd257c6da8b0c05fe45b15/pdb.gz): 1180 ms

reading 86 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

86 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 17 ms

Adding embedded #jmolscript: select ({0:85});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Phosphotransferase
source organism	Bacillus subtilis
publication title	Refined structures of the active Ser83-->Cys and impaired Ser46-->Asp histidine-containing phosphocarrier proteins. pubmed doi rcsb
molecule keywords	HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN HPR
total genus	27
structure length	86
sequence length	87
ec nomenclature
pdb deposition date	1992-09-09

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00381	PTS-HPr	PTS HPr component phosphorylation site

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1340.10	Alpha Beta	2-Layer Sandwich	Histidine-containing Protein; Chain: A;	HPr-like	2hprA00

1PFHA 1VRCC 5T1NA 1KKLH 1OPDA 1MU4A 2FEPS 1PTFA 1Y4YA 1CM3A 1Y50A 1MO1B 1CM2A 1RZRL 2OENL 3LE3A 2LRLD 5T1OA 1JEMA 1PCHA 1SPHA 3OQND 2AK7A 3OQOD 2HPRA 3IHSA 1HDNA 3LNWA 3CCDA 3EZBB 2XDFC 3LE5A 3LFGA 1ZVVJ 1KKMH 2NZUL 4XWJB 1QR5A 3EZEB 5T17A 3OQMD 1MO1A 2JELP 1FU0A 2LRKD 1J6TB 1K1CA 1POHA 3LE1A 3EZAB 1Y51A 1KA5A 1GGRB 1QFRA 1TXEA 2HIDA 2RLZA 2NZVL
chains in the Genus database with same CATH superfamily

1PFHA 1VRCC 5T1NA 1KKLH 1OPDA 1MU4A 2FEPS 1PTFA 1Y4YA 1CM3A 1Y50A 1MO1B 1CM2A 1RZRL 2OENL 3LE3A 2LRLD 5T1OA 1JEMA 1PCHA 1SPHA 3OQND 2AK7A 3OQOD 2HPRA 3IHSA 1HDNA 3LNWA 3CCDA 3EZBB 2XDFC 3LE5A 3LFGA 1ZVVJ 1KKMH 2NZUL 4XWJB 1QR5A 3EZEB 5T17A 3OQMD 1MO1A 2JELP 1FU0A 2LRKD 1J5YA 1J6TB 1K1CA 1POHA 3LE1A 3EZAB 1Y51A 1KA5A 1GGRB 1QFRA 1TXEA 2HIDA 2RLZA 2NZVL
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1PFH A;  1VRC C;  5T1N A;  1KKL H;  1OPD A;  1MU4 A;  2FEP S;  1PTF A;  1Y4Y A;  1CM3 A;  1Y50 A;  1MO1 B;  1CM2 A;  1RZR L;  2OEN L;  3LE3 A;  2LRL D;  5T1O A;  1JEM A;  1PCH A;  1SPH A;  3OQN D;  2AK7 A;  3OQO D;  2HPR A;  3IHS A;  1HDN A;  3LNW A;  3CCD A;  3EZB B;  2XDF C;  3LE5 A;  3LFG A;  1ZVV J;  1KKM H;  2NZU L;  4XWJ B;  1QR5 A;  3EZE B;  5T17 A;  3OQM D;  1MO1 A;  2JEL P;  1FU0 A;  2LRK D;  1J6T B;  1K1C A;  1POH A;  3LE1 A;  3EZA B;  1Y51 A;  1KA5 A;  1GGR B;  1QFR A;  1TXE A;  2HID A;  2RLZ A;  2NZV L; 
#chains in the Genus database with same CATH topology
 1PFH A;  1VRC C;  5T1N A;  1KKL H;  1OPD A;  1MU4 A;  2FEP S;  1PTF A;  1Y4Y A;  1CM3 A;  1Y50 A;  1MO1 B;  1CM2 A;  1RZR L;  2OEN L;  3LE3 A;  2LRL D;  5T1O A;  1JEM A;  1PCH A;  1SPH A;  3OQN D;  2AK7 A;  3OQO D;  2HPR A;  3IHS A;  1HDN A;  3LNW A;  3CCD A;  3EZB B;  2XDF C;  3LE5 A;  3LFG A;  1ZVV J;  1KKM H;  2NZU L;  4XWJ B;  1QR5 A;  3EZE B;  5T17 A;  3OQM D;  1MO1 A;  2JEL P;  1FU0 A;  2LRK D;  1J5Y A;  1J6T B;  1K1C A;  1POH A;  3LE1 A;  3EZA B;  1Y51 A;  1KA5 A;  1GGR B;  1QFR A;  1TXE A;  2HID A;  2RLZ A;  2NZV L; 
#chains in the Genus database with same CATH homology
 1PFH A;  1VRC C;  5T1N A;  1KKL H;  1OPD A;  1MU4 A;  2FEP S;  1PTF A;  1Y4Y A;  1CM3 A;  1Y50 A;  1MO1 B;  1CM2 A;  1RZR L;  2OEN L;  3LE3 A;  2LRL D;  5T1O A;  1JEM A;  1PCH A;  1SPH A;  3OQN D;  2AK7 A;  3OQO D;  2HPR A;  3IHS A;  1HDN A;  3LNW A;  3CCD A;  3EZB B;  2XDF C;  3LE5 A;  3LFG A;  1ZVV J;  1KKM H;  2NZU L;  4XWJ B;  1QR5 A;  3EZE B;  5T17 A;  3OQM D;  1MO1 A;  2JEL P;  1FU0 A;  2LRK D;  1J6T B;  1K1C A;  1POH A;  3LE1 A;  3EZA B;  1Y51 A;  1KA5 A;  1GGR B;  1QFR A;  1TXE A;  2HID A;  2RLZ A;  2NZV L;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2HPRA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations