2OENL

Structural mechanism for the fine-tuning of ccpa function by the small molecule effectors glucose-6-phosphate and fructose-1,6-bisphosphate
Total Genus 12

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
87
structure length
86
Chain Sequence
AQKTFTVTADSGIHARPATTLVQAASKFDSDINLEFNGKTVNLKIMGVMSLGIQKGATITISAEGSDEADALAALEDTMSKEGLGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
S1 (3-8)S4 (59-64)EMPTYAH1 (18-28)AH3 (70-84)S3 (41-42)S2 (35-37)TIV4 (37-40)TIV5 (67-70)TIV2 (12-15)AH2 (47-53)Updating...
connected with : NaN
molecule tags Transcription
source organism Bacillus megaterium
publication title Structural Mechanism for the Fine-tuning of CcpA Function by The Small Molecule Effectors Glucose 6-Phosphate and Fructose 1,6-Bisphosphate.
pubmed doi rcsb
molecule keywords Catabolite control protein
total genus 12
structure length 86
sequence length 87
ec nomenclature
pdb deposition date 2006-12-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF00381 PTS-HPr PTS HPr component phosphorylation site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1340.10 Alpha Beta 2-Layer Sandwich Histidine-containing Protein; Chain: A; HPr-like 2oenL00
1K1CA 2AK7A 3CCDA 5T1NA 1Y50A 1KKLH 3LE3A 4XWJB 3OQND 3EZBB 1TXEA 3OQMD 1HDNA 1OPDA 3LE5A 1KA5A 3EZEB 1CM3A 1CM2A 2FEPS 3OQOD 1J6TB 1SPHA 5T17A 5T1OA 1QFRA 1Y4YA 3LE1A 1MO1A 1FU0A 2HPRA 2LRLD 1MU4A 1PCHA 1QR5A 1Y51A 2HIDA 2OENL 1JEMA 2NZUL 3EZAB 2RLZA 1PFHA 1KKMH 1ZVVJ 1PTFA 2JELP 3LNWA 2NZVL 1POHA 1VRCC 2XDFC 3LFGA 1MO1B 2LRKD 1RZRL 1GGRB 3IHSA
chains in the Genus database with same CATH superfamily
1K1CA 2AK7A 3CCDA 5T1NA 1Y50A 1KKLH 3LE3A 4XWJB 3OQND 3EZBB 1TXEA 3OQMD 1HDNA 1OPDA 3LE5A 1KA5A 3EZEB 1CM3A 1CM2A 2FEPS 3OQOD 1J6TB 1SPHA 5T17A 5T1OA 1J5YA 1QFRA 1Y4YA 3LE1A 1MO1A 1FU0A 2HPRA 2LRLD 1MU4A 1PCHA 1QR5A 1Y51A 2HIDA 2OENL 1JEMA 2NZUL 3EZAB 2RLZA 1PFHA 1KKMH 1ZVVJ 1PTFA 2JELP 3LNWA 2NZVL 1POHA 1VRCC 2XDFC 3LFGA 1MO1B 2LRKD 1RZRL 1GGRB 3IHSA
chains in the Genus database with same CATH topology
1K1CA 2AK7A 3CCDA 5T1NA 1Y50A 1KKLH 3LE3A 4XWJB 3OQND 3EZBB 1TXEA 3OQMD 1HDNA 1OPDA 3LE5A 1KA5A 3EZEB 1CM3A 1CM2A 2FEPS 3OQOD 1J6TB 1SPHA 5T17A 5T1OA 1QFRA 1Y4YA 3LE1A 1MO1A 1FU0A 2HPRA 2LRLD 1MU4A 1PCHA 1QR5A 1Y51A 2HIDA 2OENL 1JEMA 2NZUL 3EZAB 2RLZA 1PFHA 1KKMH 1ZVVJ 1PTFA 2JELP 3LNWA 2NZVL 1POHA 1VRCC 2XDFC 3LFGA 1MO1B 2LRKD 1RZRL 1GGRB 3IHSA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1K1C A;  2AK7 A;  3CCD A;  5T1N A;  1Y50 A;  1KKL H;  3LE3 A;  4XWJ B;  3OQN D;  3EZB B;  1TXE A;  3OQM D;  1HDN A;  1OPD A;  3LE5 A;  1KA5 A;  3EZE B;  1CM3 A;  1CM2 A;  2FEP S;  3OQO D;  1J6T B;  1SPH A;  5T17 A;  5T1O A;  1QFR A;  1Y4Y A;  3LE1 A;  1MO1 A;  1FU0 A;  2HPR A;  2LRL D;  1MU4 A;  1PCH A;  1QR5 A;  1Y51 A;  2HID A;  2OEN L;  1JEM A;  2NZU L;  3EZA B;  2RLZ A;  1PFH A;  1KKM H;  1ZVV J;  1PTF A;  2JEL P;  3LNW A;  2NZV L;  1POH A;  1VRC C;  2XDF C;  3LFG A;  1MO1 B;  2LRK D;  1RZR L;  1GGR B;  3IHS A; 
#chains in the Genus database with same CATH topology
 1K1C A;  2AK7 A;  3CCD A;  5T1N A;  1Y50 A;  1KKL H;  3LE3 A;  4XWJ B;  3OQN D;  3EZB B;  1TXE A;  3OQM D;  1HDN A;  1OPD A;  3LE5 A;  1KA5 A;  3EZE B;  1CM3 A;  1CM2 A;  2FEP S;  3OQO D;  1J6T B;  1SPH A;  5T17 A;  5T1O A;  1J5Y A;  1QFR A;  1Y4Y A;  3LE1 A;  1MO1 A;  1FU0 A;  2HPR A;  2LRL D;  1MU4 A;  1PCH A;  1QR5 A;  1Y51 A;  2HID A;  2OEN L;  1JEM A;  2NZU L;  3EZA B;  2RLZ A;  1PFH A;  1KKM H;  1ZVV J;  1PTF A;  2JEL P;  3LNW A;  2NZV L;  1POH A;  1VRC C;  2XDF C;  3LFG A;  1MO1 B;  2LRK D;  1RZR L;  1GGR B;  3IHS A; 
#chains in the Genus database with same CATH homology
 1K1C A;  2AK7 A;  3CCD A;  5T1N A;  1Y50 A;  1KKL H;  3LE3 A;  4XWJ B;  3OQN D;  3EZB B;  1TXE A;  3OQM D;  1HDN A;  1OPD A;  3LE5 A;  1KA5 A;  3EZE B;  1CM3 A;  1CM2 A;  2FEP S;  3OQO D;  1J6T B;  1SPH A;  5T17 A;  5T1O A;  1QFR A;  1Y4Y A;  3LE1 A;  1MO1 A;  1FU0 A;  2HPR A;  2LRL D;  1MU4 A;  1PCH A;  1QR5 A;  1Y51 A;  2HID A;  2OEN L;  1JEM A;  2NZU L;  3EZA B;  2RLZ A;  1PFH A;  1KKM H;  1ZVV J;  1PTF A;  2JEL P;  3LNW A;  2NZV L;  1POH A;  1VRC C;  2XDF C;  3LFG A;  1MO1 B;  2LRK D;  1RZR L;  1GGR B;  3IHS A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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