2PY0A

Crystal structure of cs1 pilin chimera
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
120
structure length
120
Chain Sequence
EGTAFARSEGASALASVNPLKTTVEEALSRGWSVKSGTGTEDATKKEVPLGVAADANKLGTIALKPDPADGTADITLTFTMGGAGPKNKGKIITLTRTAADGLWKCKSDQDPQFIPKGCS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Animal Protection and Structural Studies of a Consensus Sequence Vaccine Targeting the Receptor Binding Domain of the Type IV Pilus of Pseudomonas aeruginosa.
pubmed doi rcsb
molecule tags Cell adhesion
source organism Pseudomonas aeruginosa
molecule keywords Fimbrial protein
total genus 36
structure length 120
sequence length 120
ec nomenclature
pdb deposition date 2007-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00114 Pilin Pilin (bacterial filament)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.700.10 Alpha Beta 2-Layer Sandwich Glycoprotein, Type 4 Pilin Glycoprotein, Type 4 Pilin 2py0A00
3GN9A 1AY2A 1T92A 5JW8A 1X6QA 2PILA 4LW9A 3SOJA 2KEPA 2M7GA 1X6XX 3G20A 2HI2A 1HPWA 3SOKA 1OQWA 1DZOA 1X6RA 1RG0A 1X6PA 1X6ZA 3FU1A 3JYZA 3JZZA 4V1JA 1X6YA 2PY0A 1QVEA
chains in the Genus database with same CATH superfamily
3GN9A 3N6RA 1AY2A 1T92A 5JW8A 1X6QA 2M3KA 2PILA 4LW9A 3SOJA 2KEPA 2M7GA 1ZQ7A 1X6XX 3G20A 2HI2A 1WSCA 1HPWA 3U9TA 3SOKA 1OQWA 1DZOA 3U9SA 1X6RA 1RG0A 1VAJA 1X6PA 1X6ZA 3FU1A 3JYZA 3JZZA 4V1JA 1X6YA 2PY0A 1QVEA
chains in the Genus database with same CATH topology
3GN9A 3N6RA 1AY2A 1T92A 5JW8A 1X6QA 2M3KA 2PILA 4LW9A 3SOJA 2KEPA 2M7GA 1X6XX 3G20A 2HI2A 1HPWA 3U9TA 3SOKA 1OQWA 1DZOA 3U9SA 1X6RA 1RG0A 1X6PA 1X6ZA 3FU1A 3JYZA 3JZZA 4V1JA 1X6YA 2PY0A 1QVEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GN9 A;  1AY2 A;  1T92 A;  5JW8 A;  1X6Q A;  2PIL A;  4LW9 A;  3SOJ A;  2KEP A;  2M7G A;  1X6X X;  3G20 A;  2HI2 A;  1HPW A;  3SOK A;  1OQW A;  1DZO A;  1X6R A;  1RG0 A;  1X6P A;  1X6Z A;  3FU1 A;  3JYZ A;  3JZZ A;  4V1J A;  1X6Y A;  2PY0 A;  1QVE A; 
#chains in the Genus database with same CATH topology
 3GN9 A;  3N6R A;  1AY2 A;  1T92 A;  5JW8 A;  1X6Q A;  2M3K A;  2PIL A;  4LW9 A;  3SOJ A;  2KEP A;  2M7G A;  1ZQ7 A;  1X6X X;  3G20 A;  2HI2 A;  1WSC A;  1HPW A;  3U9T A;  3SOK A;  1OQW A;  1DZO A;  3U9S A;  1X6R A;  1RG0 A;  1VAJ A;  1X6P A;  1X6Z A;  3FU1 A;  3JYZ A;  3JZZ A;  4V1J A;  1X6Y A;  2PY0 A;  1QVE A; 
#chains in the Genus database with same CATH homology
 3GN9 A;  3N6R A;  1AY2 A;  1T92 A;  5JW8 A;  1X6Q A;  2M3K A;  2PIL A;  4LW9 A;  3SOJ A;  2KEP A;  2M7G A;  1X6X X;  3G20 A;  2HI2 A;  1HPW A;  3U9T A;  3SOK A;  1OQW A;  1DZO A;  3U9S A;  1X6R A;  1RG0 A;  1X6P A;  1X6Z A;  3FU1 A;  3JYZ A;  3JZZ A;  4V1J A;  1X6Y A;  2PY0 A;  1QVE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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