2PY0A

Crystal structure of cs1 pilin chimera
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
120
structure length
120
Chain Sequence
EGTAFARSEGASALASVNPLKTTVEEALSRGWSVKSGTGTEDATKKEVPLGVAADANKLGTIALKPDPADGTADITLTFTMGGAGPKNKGKIITLTRTAADGLWKCKSDQDPQFIPKGCS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Animal Protection and Structural Studies of a Consensus Sequence Vaccine Targeting the Receptor Binding Domain of the Type IV Pilus of Pseudomonas aeruginosa.
pubmed doi rcsb
molecule tags Cell adhesion
source organism Pseudomonas aeruginosa
molecule keywords Fimbrial protein
total genus 36
structure length 120
sequence length 120
ec nomenclature
pdb deposition date 2007-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00114 Pilin Pilin (bacterial filament)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.700.10 Alpha Beta 2-Layer Sandwich Glycoprotein, Type 4 Pilin Glycoprotein, Type 4 Pilin 2py0A00
3JYZA 1OQWA 3GN9A 1HPWA 1X6RA 1QVEA 1X6PA 2M7GA 1AY2A 1RG0A 4V1JA 2PY0A 1X6XX 1X6ZA 4LW9A 3SOKA 1T92A 3G20A 3FU1A 2HI2A 3JZZA 2PILA 3SOJA 5JW8A 1X6YA 1DZOA 1X6QA 2KEPA
chains in the Genus database with same CATH superfamily
3JYZA 1OQWA 3GN9A 1HPWA 1X6RA 1VAJA 1X6PA 1QVEA 2M3KA 2M7GA 3N6RA 3U9SA 1AY2A 1RG0A 4V1JA 2PY0A 1X6XX 1X6ZA 4LW9A 3SOKA 1T92A 3G20A 3U9TA 1WSCA 3FU1A 2HI2A 3JZZA 1ZQ7A 2PILA 3SOJA 5JW8A 1X6YA 1DZOA 1X6QA 2KEPA
chains in the Genus database with same CATH topology
3JYZA 1OQWA 3GN9A 1HPWA 1X6RA 1QVEA 1X6PA 2M3KA 2M7GA 3N6RA 3U9SA 1AY2A 1RG0A 4V1JA 2PY0A 1X6XX 1X6ZA 4LW9A 3SOKA 1T92A 3G20A 3U9TA 3FU1A 2HI2A 3JZZA 2PILA 3SOJA 5JW8A 1X6YA 1DZOA 1X6QA 2KEPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JYZ A;  1OQW A;  3GN9 A;  1HPW A;  1X6R A;  1QVE A;  1X6P A;  2M7G A;  1AY2 A;  1RG0 A;  4V1J A;  2PY0 A;  1X6X X;  1X6Z A;  4LW9 A;  3SOK A;  1T92 A;  3G20 A;  3FU1 A;  2HI2 A;  3JZZ A;  2PIL A;  3SOJ A;  5JW8 A;  1X6Y A;  1DZO A;  1X6Q A;  2KEP A; 
#chains in the Genus database with same CATH topology
 3JYZ A;  1OQW A;  3GN9 A;  1HPW A;  1X6R A;  1VAJ A;  1X6P A;  1QVE A;  2M3K A;  2M7G A;  3N6R A;  3U9S A;  1AY2 A;  1RG0 A;  4V1J A;  2PY0 A;  1X6X X;  1X6Z A;  4LW9 A;  3SOK A;  1T92 A;  3G20 A;  3U9T A;  1WSC A;  3FU1 A;  2HI2 A;  3JZZ A;  1ZQ7 A;  2PIL A;  3SOJ A;  5JW8 A;  1X6Y A;  1DZO A;  1X6Q A;  2KEP A; 
#chains in the Genus database with same CATH homology
 3JYZ A;  1OQW A;  3GN9 A;  1HPW A;  1X6R A;  1QVE A;  1X6P A;  2M3K A;  2M7G A;  3N6R A;  3U9S A;  1AY2 A;  1RG0 A;  4V1J A;  2PY0 A;  1X6X X;  1X6Z A;  4LW9 A;  3SOK A;  1T92 A;  3G20 A;  3U9T A;  3FU1 A;  2HI2 A;  3JZZ A;  2PIL A;  3SOJ A;  5JW8 A;  1X6Y A;  1DZO A;  1X6Q A;  2KEP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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