2RLZ | Genus

Total Genus 8

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	8
sequence length	85
structure length	85
Chain Sequence	MVQQKVEVRLKTGLQARPAALFVQEANRFTSDVFLEKDGKKVNAKSIMGLMSLAVSTGTEVTLIAQGEDEQEALEKLAAYVQEEV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 85 atoms

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85 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transport protein
source organism	Bacillus subtilis
publication title	3D structure determination of the Crh protein from highly ambiguous solid-state NMR restraints. pubmed doi rcsb
molecule keywords	HPr-like protein crh
total genus	8
structure length	85
sequence length	85
chains with identical sequence	B
ec nomenclature
pdb deposition date	2007-09-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00381	PTS-HPr	PTS HPr component phosphorylation site

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1340.10	Alpha Beta	2-Layer Sandwich	Histidine-containing Protein; Chain: A;	HPr-like	2rlzA00

5T17A 1MO1A 1Y50A 1MU4A 3LE1A 1PCHA 2RLZA 1FU0A 3OQOD 2FEPS 1VRCC 3LFGA 1RZRL 1GGRB 3EZBB 2NZUL 1TXEA 3LE3A 1Y51A 2OENL 3LNWA 5T1NA 1K1CA 2XDFC 3EZEB 1J6TB 1KA5A 1CM3A 3CCDA 3OQND 1ZVVJ 1QR5A 2JELP 2HIDA 1KKLH 1Y4YA 2AK7A 3LE5A 1PFHA 1HDNA 1SPHA 2NZVL 1JEMA 5T1OA 1PTFA 1OPDA 1QFRA 1KKMH 3EZAB 2LRKD 1POHA 4XWJB 1MO1B 3IHSA 3OQMD 1CM2A 2LRLD 2HPRA
chains in the Genus database with same CATH superfamily

5T17A 1MO1A 1Y50A 1MU4A 3LE1A 1PCHA 2RLZA 1FU0A 3OQOD 2FEPS 1VRCC 3LFGA 1RZRL 1GGRB 3EZBB 2NZUL 1TXEA 3LE3A 1Y51A 2OENL 3LNWA 5T1NA 1K1CA 2XDFC 3EZEB 1J6TB 1KA5A 1CM3A 3CCDA 3OQND 1ZVVJ 1QR5A 1J5YA 2JELP 2HIDA 1KKLH 1Y4YA 2AK7A 3LE5A 1PFHA 1HDNA 1SPHA 2NZVL 1JEMA 5T1OA 1PTFA 1OPDA 1QFRA 1KKMH 3EZAB 2LRKD 1POHA 4XWJB 1MO1B 3IHSA 3OQMD 1CM2A 2LRLD 2HPRA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5T17 A;  1MO1 A;  1Y50 A;  1MU4 A;  3LE1 A;  1PCH A;  2RLZ A;  1FU0 A;  3OQO D;  2FEP S;  1VRC C;  3LFG A;  1RZR L;  1GGR B;  3EZB B;  2NZU L;  1TXE A;  3LE3 A;  1Y51 A;  2OEN L;  3LNW A;  5T1N A;  1K1C A;  2XDF C;  3EZE B;  1J6T B;  1KA5 A;  1CM3 A;  3CCD A;  3OQN D;  1ZVV J;  1QR5 A;  2JEL P;  2HID A;  1KKL H;  1Y4Y A;  2AK7 A;  3LE5 A;  1PFH A;  1HDN A;  1SPH A;  2NZV L;  1JEM A;  5T1O A;  1PTF A;  1OPD A;  1QFR A;  1KKM H;  3EZA B;  2LRK D;  1POH A;  4XWJ B;  1MO1 B;  3IHS A;  3OQM D;  1CM2 A;  2LRL D;  2HPR A; 
#chains in the Genus database with same CATH topology
 5T17 A;  1MO1 A;  1Y50 A;  1MU4 A;  3LE1 A;  1PCH A;  2RLZ A;  1FU0 A;  3OQO D;  2FEP S;  1VRC C;  3LFG A;  1RZR L;  1GGR B;  3EZB B;  2NZU L;  1TXE A;  3LE3 A;  1Y51 A;  2OEN L;  3LNW A;  5T1N A;  1K1C A;  2XDF C;  3EZE B;  1J6T B;  1KA5 A;  1CM3 A;  3CCD A;  3OQN D;  1ZVV J;  1QR5 A;  1J5Y A;  2JEL P;  2HID A;  1KKL H;  1Y4Y A;  2AK7 A;  3LE5 A;  1PFH A;  1HDN A;  1SPH A;  2NZV L;  1JEM A;  5T1O A;  1PTF A;  1OPD A;  1QFR A;  1KKM H;  3EZA B;  2LRK D;  1POH A;  4XWJ B;  1MO1 B;  3IHS A;  3OQM D;  1CM2 A;  2LRL D;  2HPR A; 
#chains in the Genus database with same CATH homology
 5T17 A;  1MO1 A;  1Y50 A;  1MU4 A;  3LE1 A;  1PCH A;  2RLZ A;  1FU0 A;  3OQO D;  2FEP S;  1VRC C;  3LFG A;  1RZR L;  1GGR B;  3EZB B;  2NZU L;  1TXE A;  3LE3 A;  1Y51 A;  2OEN L;  3LNW A;  5T1N A;  1K1C A;  2XDF C;  3EZE B;  1J6T B;  1KA5 A;  1CM3 A;  3CCD A;  3OQN D;  1ZVV J;  1QR5 A;  2JEL P;  2HID A;  1KKL H;  1Y4Y A;  2AK7 A;  3LE5 A;  1PFH A;  1HDN A;  1SPH A;  2NZV L;  1JEM A;  5T1O A;  1PTF A;  1OPD A;  1QFR A;  1KKM H;  3EZA B;  2LRK D;  1POH A;  4XWJ B;  1MO1 B;  3IHS A;  3OQM D;  1CM2 A;  2LRL D;  2HPR A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2RLZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations