2RLZ | Genus

Total Genus 8

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	8
sequence length	85
structure length	85
Chain Sequence	MVQQKVEVRLKTGLQARPAALFVQEANRFTSDVFLEKDGKKVNAKSIMGLMSLAVSTGTEVTLIAQGEDEQEALEKLAAYVQEEV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5cfd997c59a281dbe411246b/pdb.gz

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The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5cfd997c59a281dbe411246b/pdb.gz): 1435 ms

reading 85 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

85 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 16 ms

Adding embedded #jmolscript: select ({0:84});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transport protein
source organism	Bacillus subtilis
publication title	3D structure determination of the Crh protein from highly ambiguous solid-state NMR restraints. pubmed doi rcsb
molecule keywords	HPr-like protein crh
total genus	8
structure length	85
sequence length	85
chains with identical sequence	B
ec nomenclature
pdb deposition date	2007-09-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00381	PTS-HPr	PTS HPr component phosphorylation site

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1340.10	Alpha Beta	2-Layer Sandwich	Histidine-containing Protein; Chain: A;	HPr-like	2rlzA00

2OENL 3OQMD 4XWJB 1POHA 3EZBB 5T17A 1K1CA 3LNWA 1KKLH 3IHSA 3OQOD 1KKMH 1RZRL 1Y51A 2AK7A 1Y50A 1TXEA 2HIDA 1MU4A 1HDNA 1CM2A 3OQND 3LFGA 2XDFC 3LE5A 1FU0A 1JEMA 1QFRA 1SPHA 3LE3A 3EZEB 5T1NA 1CM3A 5T1OA 2JELP 1Y4YA 3CCDA 2HPRA 3EZAB 3LE1A 1OPDA 1PFHA 1VRCC 1MO1A 1KA5A 1J6TB 2RLZA 1MO1B 2FEPS 2NZUL 2LRKD 1GGRB 1PCHA 1PTFA 2NZVL 2LRLD 1ZVVJ 1QR5A
chains in the Genus database with same CATH superfamily

2OENL 3OQMD 4XWJB 1J5YA 1POHA 3EZBB 5T17A 1K1CA 3LNWA 1KKLH 3IHSA 3OQOD 1KKMH 1RZRL 1Y51A 2AK7A 1Y50A 1TXEA 2HIDA 1MU4A 1HDNA 1CM2A 3OQND 3LFGA 2XDFC 3LE5A 1FU0A 1JEMA 1QFRA 1SPHA 3LE3A 3EZEB 5T1NA 1CM3A 5T1OA 2JELP 1Y4YA 3CCDA 2HPRA 3EZAB 3LE1A 1OPDA 1PFHA 1VRCC 1MO1A 1KA5A 1J6TB 2RLZA 1MO1B 2FEPS 2NZUL 2LRKD 1GGRB 1PCHA 1PTFA 2NZVL 2LRLD 1ZVVJ 1QR5A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2OEN L;  3OQM D;  4XWJ B;  1POH A;  3EZB B;  5T17 A;  1K1C A;  3LNW A;  1KKL H;  3IHS A;  3OQO D;  1KKM H;  1RZR L;  1Y51 A;  2AK7 A;  1Y50 A;  1TXE A;  2HID A;  1MU4 A;  1HDN A;  1CM2 A;  3OQN D;  3LFG A;  2XDF C;  3LE5 A;  1FU0 A;  1JEM A;  1QFR A;  1SPH A;  3LE3 A;  3EZE B;  5T1N A;  1CM3 A;  5T1O A;  2JEL P;  1Y4Y A;  3CCD A;  2HPR A;  3EZA B;  3LE1 A;  1OPD A;  1PFH A;  1VRC C;  1MO1 A;  1KA5 A;  1J6T B;  2RLZ A;  1MO1 B;  2FEP S;  2NZU L;  2LRK D;  1GGR B;  1PCH A;  1PTF A;  2NZV L;  2LRL D;  1ZVV J;  1QR5 A; 
#chains in the Genus database with same CATH topology
 2OEN L;  3OQM D;  4XWJ B;  1J5Y A;  1POH A;  3EZB B;  5T17 A;  1K1C A;  3LNW A;  1KKL H;  3IHS A;  3OQO D;  1KKM H;  1RZR L;  1Y51 A;  2AK7 A;  1Y50 A;  1TXE A;  2HID A;  1MU4 A;  1HDN A;  1CM2 A;  3OQN D;  3LFG A;  2XDF C;  3LE5 A;  1FU0 A;  1JEM A;  1QFR A;  1SPH A;  3LE3 A;  3EZE B;  5T1N A;  1CM3 A;  5T1O A;  2JEL P;  1Y4Y A;  3CCD A;  2HPR A;  3EZA B;  3LE1 A;  1OPD A;  1PFH A;  1VRC C;  1MO1 A;  1KA5 A;  1J6T B;  2RLZ A;  1MO1 B;  2FEP S;  2NZU L;  2LRK D;  1GGR B;  1PCH A;  1PTF A;  2NZV L;  2LRL D;  1ZVV J;  1QR5 A; 
#chains in the Genus database with same CATH homology
 2OEN L;  3OQM D;  4XWJ B;  1POH A;  3EZB B;  5T17 A;  1K1C A;  3LNW A;  1KKL H;  3IHS A;  3OQO D;  1KKM H;  1RZR L;  1Y51 A;  2AK7 A;  1Y50 A;  1TXE A;  2HID A;  1MU4 A;  1HDN A;  1CM2 A;  3OQN D;  3LFG A;  2XDF C;  3LE5 A;  1FU0 A;  1JEM A;  1QFR A;  1SPH A;  3LE3 A;  3EZE B;  5T1N A;  1CM3 A;  5T1O A;  2JEL P;  1Y4Y A;  3CCD A;  2HPR A;  3EZA B;  3LE1 A;  1OPD A;  1PFH A;  1VRC C;  1MO1 A;  1KA5 A;  1J6T B;  2RLZ A;  1MO1 B;  2FEP S;  2NZU L;  2LRK D;  1GGR B;  1PCH A;  1PTF A;  2NZV L;  2LRL D;  1ZVV J;  1QR5 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2RLZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations