2XDF | Genus

Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	17
sequence length	85
structure length	85
Chain Sequence	MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transferase
source organism	Escherichia coli
publication title	Solution Structure of the 128 kDa Enzyme I Dimer from Escherichia Coli and its 146 kDa Complex with Hpr Using Residual Dipolar Couplings and Small- and Wide-Angle X-Ray Scattering. pubmed doi rcsb
molecule keywords	PHOSPHOENOLPYRUVATE-PROTEIN PHOSPHOTRANSFERASE
total genus	17
structure length	85
sequence length	85
chains with identical sequence	D
ec nomenclature
pdb deposition date	2010-04-30

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF00381	PTS-HPr	PTS HPr component phosphorylation site

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1340.10	Alpha Beta	2-Layer Sandwich	Histidine-containing Protein; Chain: A;	HPr-like	2xdfC00

2HPRA 5T17A 3EZEB 1GGRB 1KKLH 2NZVL 1Y50A 3LE5A 1ZVVJ 1SPHA 1KA5A 3OQMD 2LRLD 1MU4A 5T1NA 2JELP 1RZRL 1K1CA 1QR5A 1KKMH 1Y4YA 2NZUL 4XWJB 3OQOD 1JEMA 3LNWA 1PTFA 2HIDA 3LE1A 1Y51A 1MO1B 1VRCC 3IHSA 3EZBB 2AK7A 1PCHA 1TXEA 1QFRA 2LRKD 1FU0A 3OQND 2XDFC 1PFHA 3CCDA 1MO1A 3LFGA 5T1OA 1CM3A 1POHA 2OENL 2RLZA 1HDNA 3LE3A 2FEPS 1OPDA 1J6TB 1CM2A 3EZAB
chains in the Genus database with same CATH superfamily

2HPRA 5T17A 3EZEB 1GGRB 1KKLH 2NZVL 1Y50A 3LE5A 1ZVVJ 1SPHA 1KA5A 3OQMD 2LRLD 1MU4A 5T1NA 2JELP 1RZRL 1K1CA 1QR5A 1KKMH 1Y4YA 2NZUL 4XWJB 3OQOD 1JEMA 3LNWA 1PTFA 2HIDA 3LE1A 1Y51A 1MO1B 1VRCC 3IHSA 3EZBB 2AK7A 1PCHA 1TXEA 1QFRA 2LRKD 1FU0A 3OQND 2XDFC 1J5YA 1PFHA 1MO1A 3CCDA 3LFGA 5T1OA 1CM3A 1POHA 2OENL 2RLZA 1HDNA 3LE3A 2FEPS 1OPDA 1J6TB 1CM2A 3EZAB
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2HPR A;  5T17 A;  3EZE B;  1GGR B;  1KKL H;  2NZV L;  1Y50 A;  3LE5 A;  1ZVV J;  1SPH A;  1KA5 A;  3OQM D;  2LRL D;  1MU4 A;  5T1N A;  2JEL P;  1RZR L;  1K1C A;  1QR5 A;  1KKM H;  1Y4Y A;  2NZU L;  4XWJ B;  3OQO D;  1JEM A;  3LNW A;  1PTF A;  2HID A;  3LE1 A;  1Y51 A;  1MO1 B;  1VRC C;  3IHS A;  3EZB B;  2AK7 A;  1PCH A;  1TXE A;  1QFR A;  2LRK D;  1FU0 A;  3OQN D;  2XDF C;  1PFH A;  3CCD A;  1MO1 A;  3LFG A;  5T1O A;  1CM3 A;  1POH A;  2OEN L;  2RLZ A;  1HDN A;  3LE3 A;  2FEP S;  1OPD A;  1J6T B;  1CM2 A;  3EZA B; 
#chains in the Genus database with same CATH topology
 2HPR A;  5T17 A;  3EZE B;  1GGR B;  1KKL H;  2NZV L;  1Y50 A;  3LE5 A;  1ZVV J;  1SPH A;  1KA5 A;  3OQM D;  2LRL D;  1MU4 A;  5T1N A;  2JEL P;  1RZR L;  1K1C A;  1QR5 A;  1KKM H;  1Y4Y A;  2NZU L;  4XWJ B;  3OQO D;  1JEM A;  3LNW A;  1PTF A;  2HID A;  3LE1 A;  1Y51 A;  1MO1 B;  1VRC C;  3IHS A;  3EZB B;  2AK7 A;  1PCH A;  1TXE A;  1QFR A;  2LRK D;  1FU0 A;  3OQN D;  2XDF C;  1J5Y A;  1PFH A;  1MO1 A;  3CCD A;  3LFG A;  5T1O A;  1CM3 A;  1POH A;  2OEN L;  2RLZ A;  1HDN A;  3LE3 A;  2FEP S;  1OPD A;  1J6T B;  1CM2 A;  3EZA B; 
#chains in the Genus database with same CATH homology
 2HPR A;  5T17 A;  3EZE B;  1GGR B;  1KKL H;  2NZV L;  1Y50 A;  3LE5 A;  1ZVV J;  1SPH A;  1KA5 A;  3OQM D;  2LRL D;  1MU4 A;  5T1N A;  2JEL P;  1RZR L;  1K1C A;  1QR5 A;  1KKM H;  1Y4Y A;  2NZU L;  4XWJ B;  3OQO D;  1JEM A;  3LNW A;  1PTF A;  2HID A;  3LE1 A;  1Y51 A;  1MO1 B;  1VRC C;  3IHS A;  3EZB B;  2AK7 A;  1PCH A;  1TXE A;  1QFR A;  2LRK D;  1FU0 A;  3OQN D;  2XDF C;  1PFH A;  3CCD A;  1MO1 A;  3LFG A;  5T1O A;  1CM3 A;  1POH A;  2OEN L;  2RLZ A;  1HDN A;  3LE3 A;  2FEP S;  1OPD A;  1J6T B;  1CM2 A;  3EZA B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2XDFC

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations