3B9G | Genus

Total Genus 121

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	121
sequence length	317
structure length	317
Chain Sequence	SAKNVVLDHDGNLDDFVAMVLLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCLMHNNMNLPLFPIGKSAATAVNPFPKEWRCLAKNMDDMPILNIPENVELWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPVRSPYVQRFGEQTNFLLSILVGTMWAMGGGYAWDALTAAYVVDQKVANVDPVPIDVVVDKQPNEGATVRTDAENYPLTFVARNPEAEFFLDMLLRSARAC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 317 atoms

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317 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	A Flexible Loop as a Functional Element in the Catalytic Mechanism of Nucleoside Hydrolase from Trypanosoma vivax. pubmed doi rcsb
molecule keywords	IAG-nucleoside hydrolase
molecule tags	Hydrolase
source organism	Trypanosoma vivax
total genus	121
structure length	317
sequence length	317
chains with identical sequence	B
ec nomenclature	ec 3.2.2.1: Purine nucleosidase.
pdb deposition date	2007-11-05

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01156	IU_nuc_hydro	Inosine-uridine preferring nucleoside hydrolase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.245.10	Alpha Beta	Alpha-Beta Complex	Inosine-uridine Nucleoside N-ribohydrolase; Chain A	Ribonucleoside hydrolase-like	3b9gA00

4I73A 4KPNA 3FZ0A 4I72A 1KICA 1MASA 3MKNA 2YHGA 3T8JA 3MKMA 1KIEA 4I75A 4KL0A 3EPWA 3B9GA 4KPOA 4I71A 4WR2A 1EZRA 2FF2A 4P5FA 2C40A 1R4FA 3EPXA 1HOZA 5TSQA 1YOEA 4I74A 2FF1A 3B9XA 2MASA 3G5IA 4I70A 1HP0A 3T8IA 1Q8FA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4I73 A;  4KPN A;  3FZ0 A;  4I72 A;  1KIC A;  1MAS A;  3MKN A;  2YHG A;  3T8J A;  3MKM A;  1KIE A;  4I75 A;  4KL0 A;  3EPW A;  3B9G A;  4KPO A;  4I71 A;  4WR2 A;  1EZR A;  2FF2 A;  4P5F A;  2C40 A;  1R4F A;  3EPX A;  1HOZ A;  5TSQ A;  1YOE A;  4I74 A;  2FF1 A;  3B9X A;  2MAS A;  3G5I A;  4I70 A;  1HP0 A;  3T8I A;  1Q8F A; 
#chains in the Genus database with same CATH topology
 4I73 A;  4KPN A;  3FZ0 A;  4I72 A;  1KIC A;  1MAS A;  3MKN A;  2YHG A;  3T8J A;  3MKM A;  1KIE A;  4I75 A;  4KL0 A;  3EPW A;  3B9G A;  4KPO A;  4I71 A;  4WR2 A;  1EZR A;  2FF2 A;  4P5F A;  2C40 A;  1R4F A;  3EPX A;  1HOZ A;  5TSQ A;  1YOE A;  4I74 A;  2FF1 A;  3B9X A;  2MAS A;  3G5I A;  4I70 A;  1HP0 A;  3T8I A;  1Q8F A; 
#chains in the Genus database with same CATH homology
 4I73 A;  4KPN A;  3FZ0 A;  4I72 A;  1KIC A;  1MAS A;  3MKN A;  2YHG A;  3T8J A;  3MKM A;  1KIE A;  4I75 A;  4KL0 A;  3EPW A;  3B9G A;  4KPO A;  4I71 A;  4WR2 A;  1EZR A;  2FF2 A;  4P5F A;  2C40 A;  1R4F A;  3EPX A;  1HOZ A;  5TSQ A;  1YOE A;  4I74 A;  2FF1 A;  3B9X A;  2MAS A;  3G5I A;  4I70 A;  1HP0 A;  3T8I A;  1Q8F A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3B9GA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations