3EPX | Genus

Total Genus 119

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	119
sequence length	326
structure length	322
Chain Sequence	AKNVVLDHDGNLDDFVAMVLLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCLMHNNMNLPLFPIGKSAATAVNPFPKEWRCLAKNMDDMPILNIPENVELWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPVRSPYVQRFGEQTNFLLSILVGTMWAMCTHCEGDGYYAWDALTAAYVVDQKVANVDPVPIDVVVDKQPNEGATVRTDAENYPLTFVARNPEAEFFLDMLLRSARAC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 322 atoms

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322 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structures of T. vivax nucleoside hydrolase in complex with new potent and specific inhibitors. pubmed doi rcsb
molecule keywords	IAG-nucleoside hydrolase
molecule tags	Hydrolase
source organism	Trypanosoma vivax
total genus	119
structure length	322
sequence length	326
chains with identical sequence	B
ec nomenclature	ec 3.2.2.1: Purine nucleosidase.
pdb deposition date	2008-09-30

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01156	IU_nuc_hydro	Inosine-uridine preferring nucleoside hydrolase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.245.10	Alpha Beta	Alpha-Beta Complex	Inosine-uridine Nucleoside N-ribohydrolase; Chain A	Ribonucleoside hydrolase-like	3epxA00

1MASA 2C40A 1Q8FA 3G5IA 5TSQA 4KL0A 1R4FA 1HOZA 4KPNA 4I73A 4I74A 1HP0A 3EPWA 1KIEA 1YOEA 1EZRA 2FF2A 3T8IA 2FF1A 2MASA 4I71A 4P5FA 4KPOA 1KICA 3B9XA 4I75A 3MKNA 3T8JA 4I70A 3FZ0A 4WR2A 3EPXA 3B9GA 4I72A 3MKMA 2YHGA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1MAS A;  2C40 A;  1Q8F A;  3G5I A;  5TSQ A;  4KL0 A;  1R4F A;  1HOZ A;  4KPN A;  4I73 A;  4I74 A;  1HP0 A;  3EPW A;  1KIE A;  1YOE A;  1EZR A;  2FF2 A;  3T8I A;  2FF1 A;  2MAS A;  4I71 A;  4P5F A;  4KPO A;  1KIC A;  3B9X A;  4I75 A;  3MKN A;  3T8J A;  4I70 A;  3FZ0 A;  4WR2 A;  3EPX A;  3B9G A;  4I72 A;  3MKM A;  2YHG A; 
#chains in the Genus database with same CATH topology
 1MAS A;  2C40 A;  1Q8F A;  3G5I A;  5TSQ A;  4KL0 A;  1R4F A;  1HOZ A;  4KPN A;  4I73 A;  4I74 A;  1HP0 A;  3EPW A;  1KIE A;  1YOE A;  1EZR A;  2FF2 A;  3T8I A;  2FF1 A;  2MAS A;  4I71 A;  4P5F A;  4KPO A;  1KIC A;  3B9X A;  4I75 A;  3MKN A;  3T8J A;  4I70 A;  3FZ0 A;  4WR2 A;  3EPX A;  3B9G A;  4I72 A;  3MKM A;  2YHG A; 
#chains in the Genus database with same CATH homology
 1MAS A;  2C40 A;  1Q8F A;  3G5I A;  5TSQ A;  4KL0 A;  1R4F A;  1HOZ A;  4KPN A;  4I73 A;  4I74 A;  1HP0 A;  3EPW A;  1KIE A;  1YOE A;  1EZR A;  2FF2 A;  3T8I A;  2FF1 A;  2MAS A;  4I71 A;  4P5F A;  4KPO A;  1KIC A;  3B9X A;  4I75 A;  3MKN A;  3T8J A;  4I70 A;  3FZ0 A;  4WR2 A;  3EPX A;  3B9G A;  4I72 A;  3MKM A;  2YHG A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3EPXA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations