3FU1A

Crystal structure of the major pseudopilin from the type 2 secretion system of vibrio cholerae
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
115
structure length
115
Chain Sequence
GAMGNKEKADQQKAVTDIVALENALDMYKLDNSVYPTTDQGLEALVTKPTNPEPRNYREGGYIKRLPKDPWGNDYQYLSPGDKGTIDVFTLGADGQEGGEGTGADIGNWNIQDFQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Calcium is essential for the major pseudopilin in the type 2 secretion system.
pubmed doi rcsb
molecule tags Protein transport
source organism Vibrio cholerae
molecule keywords General secretion pathway protein G
total genus 32
structure length 115
sequence length 115
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-01-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.700.10 Alpha Beta 2-Layer Sandwich Glycoprotein, Type 4 Pilin Glycoprotein, Type 4 Pilin 3fu1A01
3JYZA 1X6RA 3SOKA 1X6ZA 1HPWA 1DZOA 1AY2A 3JZZA 2HI2A 2M7GA 5JW8A 2KEPA 1X6QA 3SOJA 1X6XX 1X6YA 3G20A 1X6PA 4V1JA 1QVEA 1OQWA 2PILA 4LW9A 1RG0A 3GN9A 3FU1A 1T92A 2PY0A
chains in the Genus database with same CATH superfamily
3JYZA 1WSCA 3U9SA 1X6RA 3SOKA 1X6ZA 1HPWA 1DZOA 1AY2A 3JZZA 2HI2A 2M7GA 3N6RA 5JW8A 3U9TA 2KEPA 1ZQ7A 1X6QA 3SOJA 1X6XX 1VAJA 1X6YA 3G20A 2M3KA 1X6PA 4V1JA 1QVEA 1OQWA 2PILA 4LW9A 1RG0A 3GN9A 3FU1A 1T92A 2PY0A
chains in the Genus database with same CATH topology
3JYZA 3U9SA 1X6RA 3SOKA 1X6ZA 1HPWA 1DZOA 1AY2A 3JZZA 2HI2A 2M7GA 3N6RA 5JW8A 3U9TA 2KEPA 1X6QA 3SOJA 1X6XX 1X6YA 3G20A 2M3KA 1X6PA 4V1JA 1QVEA 1OQWA 2PILA 4LW9A 1RG0A 3GN9A 3FU1A 1T92A 2PY0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JYZ A;  1X6R A;  3SOK A;  1X6Z A;  1HPW A;  1DZO A;  1AY2 A;  3JZZ A;  2HI2 A;  2M7G A;  5JW8 A;  2KEP A;  1X6Q A;  3SOJ A;  1X6X X;  1X6Y A;  3G20 A;  1X6P A;  4V1J A;  1QVE A;  1OQW A;  2PIL A;  4LW9 A;  1RG0 A;  3GN9 A;  3FU1 A;  1T92 A;  2PY0 A; 
#chains in the Genus database with same CATH topology
 3JYZ A;  1WSC A;  3U9S A;  1X6R A;  3SOK A;  1X6Z A;  1HPW A;  1DZO A;  1AY2 A;  3JZZ A;  2HI2 A;  2M7G A;  3N6R A;  5JW8 A;  3U9T A;  2KEP A;  1ZQ7 A;  1X6Q A;  3SOJ A;  1X6X X;  1VAJ A;  1X6Y A;  3G20 A;  2M3K A;  1X6P A;  4V1J A;  1QVE A;  1OQW A;  2PIL A;  4LW9 A;  1RG0 A;  3GN9 A;  3FU1 A;  1T92 A;  2PY0 A; 
#chains in the Genus database with same CATH homology
 3JYZ A;  3U9S A;  1X6R A;  3SOK A;  1X6Z A;  1HPW A;  1DZO A;  1AY2 A;  3JZZ A;  2HI2 A;  2M7G A;  3N6R A;  5JW8 A;  3U9T A;  2KEP A;  1X6Q A;  3SOJ A;  1X6X X;  1X6Y A;  3G20 A;  2M3K A;  1X6P A;  4V1J A;  1QVE A;  1OQW A;  2PIL A;  4LW9 A;  1RG0 A;  3GN9 A;  3FU1 A;  1T92 A;  2PY0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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