3FZ0A

Inosine-guanosine nucleoside hydrolase (ig-nh)
Total Genus 115

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
356
structure length
327
Chain Sequence
VHRKLIIDTDCGGDDAIAIMLAMTQPDVEVIAITVVWGNVEVNQGMENIGKLLDLYDADIPFFRGAEGPLVGERETVQWGGFGSDGFGDAGFPPSQRVALQPKRHAALEILKILEEAEPSDDVVYQLVALGPLTNVALALRLNPDLFSKLGTDTIPGIVIMNGTSESKGNSNMAAEFNSHCDPEAGVVVLQHKGWKCPVQLVNWEVTVNSPMTWGFYDKLVNRQNKWQEFIEKLFQRLEAFTRVTCVVPDAVAVLVAIRPESVLDSFLTYVTVELHGRETRGATCIDWYGTEQSMAKKGRWRNCNVITKVDNEMFLKALRDIVEYVA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (3-10)TII1 (26-29)AH4 (134-143)AH1 (14-24)TIV1 (38-41)AH9 (238-255)EMPTYS2 (29-36)AH2 (43-57)TVIII1 (39-42)S3 (63-65)TI2 (84-87)TI3 (96-99)TIV6 (222-236)3H1 (99-101)AH5 (178-182)TVIII2 (70-73)TI1 (81-84)TIV2 (86-89)S4 (124-131)TI5 (153-156)TVIII3 (157-160)TVIII4 (196-199)S6 (200-203)S5 (159-162)TI6 (173-176)TIV3 (165-168)TIV4 (170-173)TIV5 (171-174)AH10 (279-288)AH6 (184-192)S9 (293-304)TI7 (304-307)AH7 (205-210)TI8 (307-310)TII2 (310-313)S7 (213-214)AH8 (215-222)TI9 (308-311)S8 (275-276)3H3 (290-292)S10 (313-317)TI4 (121-124)3H2 (146-150)AH11 (322-328)TI10 (317-320)AH3 (107-117)Updating...
connected with : NaN
publication title Structure and mechanism of the 6-oxopurine nucleosidase from Trypanosoma brucei brucei
pubmed doi rcsb
molecule keywords Nucleoside hydrolase, putative
molecule tags Hydrolase
source organism Trypanosoma brucei
total genus 115
structure length 327
sequence length 356
chains with identical sequence B, C, D
ec nomenclature ec 3.2.2.1: Purine nucleosidase.
pdb deposition date 2009-01-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01156 IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.245.10 Alpha Beta Alpha-Beta Complex Inosine-uridine Nucleoside N-ribohydrolase; Chain A Ribonucleoside hydrolase-like 3fz0A00
3B9GA 1R4FA 1HOZA 1YOEA 2C40A 4I73A 1KICA 3FZ0A 1EZRA 1MASA 2MASA 2YHGA 4KPNA 3MKNA 3B9XA 4I72A 1KIEA 2FF1A 4I70A 4I74A 2FF2A 3MKMA 4KL0A 3EPXA 3G5IA 4WR2A 4P5FA 3T8IA 4I75A 1HP0A 1Q8FA 4KPOA 3T8JA 5TSQA 3EPWA 4I71A
chains in the Genus database with same CATH superfamily
3B9GA 1R4FA 1HOZA 1YOEA 2C40A 4I73A 1KICA 3FZ0A 1EZRA 1MASA 2MASA 2YHGA 4KPNA 3MKNA 3B9XA 4I72A 1KIEA 2FF1A 4I70A 4I74A 2FF2A 3MKMA 4KL0A 3EPXA 3G5IA 4WR2A 4P5FA 3T8IA 4I75A 1HP0A 1Q8FA 4KPOA 3T8JA 5TSQA 3EPWA 4I71A
chains in the Genus database with same CATH topology
3B9GA 1R4FA 1HOZA 1YOEA 2C40A 4I73A 1KICA 3FZ0A 1EZRA 1MASA 2MASA 2YHGA 4KPNA 3MKNA 3B9XA 4I72A 1KIEA 2FF1A 4I70A 4I74A 2FF2A 3MKMA 4KL0A 3EPXA 3G5IA 4WR2A 4P5FA 3T8IA 4I75A 1HP0A 1Q8FA 4KPOA 3T8JA 5TSQA 3EPWA 4I71A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B9G A;  1R4F A;  1HOZ A;  1YOE A;  2C40 A;  4I73 A;  1KIC A;  3FZ0 A;  1EZR A;  1MAS A;  2MAS A;  2YHG A;  4KPN A;  3MKN A;  3B9X A;  4I72 A;  1KIE A;  2FF1 A;  4I70 A;  4I74 A;  2FF2 A;  3MKM A;  4KL0 A;  3EPX A;  3G5I A;  4WR2 A;  4P5F A;  3T8I A;  4I75 A;  1HP0 A;  1Q8F A;  4KPO A;  3T8J A;  5TSQ A;  3EPW A;  4I71 A; 
#chains in the Genus database with same CATH topology
 3B9G A;  1R4F A;  1HOZ A;  1YOE A;  2C40 A;  4I73 A;  1KIC A;  3FZ0 A;  1EZR A;  1MAS A;  2MAS A;  2YHG A;  4KPN A;  3MKN A;  3B9X A;  4I72 A;  1KIE A;  2FF1 A;  4I70 A;  4I74 A;  2FF2 A;  3MKM A;  4KL0 A;  3EPX A;  3G5I A;  4WR2 A;  4P5F A;  3T8I A;  4I75 A;  1HP0 A;  1Q8F A;  4KPO A;  3T8J A;  5TSQ A;  3EPW A;  4I71 A; 
#chains in the Genus database with same CATH homology
 3B9G A;  1R4F A;  1HOZ A;  1YOE A;  2C40 A;  4I73 A;  1KIC A;  3FZ0 A;  1EZR A;  1MAS A;  2MAS A;  2YHG A;  4KPN A;  3MKN A;  3B9X A;  4I72 A;  1KIE A;  2FF1 A;  4I70 A;  4I74 A;  2FF2 A;  3MKM A;  4KL0 A;  3EPX A;  3G5I A;  4WR2 A;  4P5F A;  3T8I A;  4I75 A;  1HP0 A;  1Q8F A;  4KPO A;  3T8J A;  5TSQ A;  3EPW A;  4I71 A; 
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#similar chains, but unknotted
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