3G20A

Crystal structure of the major pseudopilin from the type 2 secretion system of enterohaemorrhagic escherichia coli
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
114
structure length
114
Chain Sequence
SLVVPNLMGNKDKADRQKVMSDLVALESTLDMYRLDNNRYPTTEQGLRALVSKPTVQPEPRNYRQDGYIRRLPQDPWGGDYQLLNPGQYSDIDIFSPGPDGVPNTEDDIGNWTL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Calcium is essential for the major pseudopilin in the type 2 secretion system.
pubmed doi rcsb
molecule tags Protein transport
source organism Escherichia coli o157:h7
molecule keywords Type II secretion protein
total genus 32
structure length 114
sequence length 114
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-01-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08334 T2SSG Type II secretion system (T2SS), protein G
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.700.10 Alpha Beta 2-Layer Sandwich Glycoprotein, Type 4 Pilin Glycoprotein, Type 4 Pilin 3g20A01
1HPWA 1X6YA 2PILA 3JZZA 3SOJA 1RG0A 1X6RA 2PY0A 1X6PA 4V1JA 3G20A 2HI2A 3JYZA 1X6ZA 3GN9A 1OQWA 2KEPA 1X6QA 5JW8A 1X6XX 1DZOA 4LW9A 3SOKA 1AY2A 1T92A 2M7GA 3FU1A 1QVEA
chains in the Genus database with same CATH superfamily
1HPWA 1X6YA 3U9TA 1ZQ7A 2PILA 3JZZA 3SOJA 1RG0A 1X6RA 1WSCA 2PY0A 1X6PA 4V1JA 3G20A 2HI2A 2M3KA 3JYZA 1VAJA 1X6ZA 3GN9A 3U9SA 1OQWA 2KEPA 1X6QA 5JW8A 1X6XX 3N6RA 1DZOA 4LW9A 3SOKA 1AY2A 1T92A 2M7GA 3FU1A 1QVEA
chains in the Genus database with same CATH topology
1HPWA 1X6YA 3U9TA 2PILA 3JZZA 3SOJA 1RG0A 1X6RA 2PY0A 1X6PA 4V1JA 3G20A 2HI2A 2M3KA 3JYZA 1X6ZA 3GN9A 3U9SA 1OQWA 2KEPA 1X6QA 5JW8A 1X6XX 3N6RA 1DZOA 4LW9A 3SOKA 1AY2A 1T92A 2M7GA 3FU1A 1QVEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HPW A;  1X6Y A;  2PIL A;  3JZZ A;  3SOJ A;  1RG0 A;  1X6R A;  2PY0 A;  1X6P A;  4V1J A;  3G20 A;  2HI2 A;  3JYZ A;  1X6Z A;  3GN9 A;  1OQW A;  2KEP A;  1X6Q A;  5JW8 A;  1X6X X;  1DZO A;  4LW9 A;  3SOK A;  1AY2 A;  1T92 A;  2M7G A;  3FU1 A;  1QVE A; 
#chains in the Genus database with same CATH topology
 1HPW A;  1X6Y A;  3U9T A;  1ZQ7 A;  2PIL A;  3JZZ A;  3SOJ A;  1RG0 A;  1X6R A;  1WSC A;  2PY0 A;  1X6P A;  4V1J A;  3G20 A;  2HI2 A;  2M3K A;  3JYZ A;  1VAJ A;  1X6Z A;  3GN9 A;  3U9S A;  1OQW A;  2KEP A;  1X6Q A;  5JW8 A;  1X6X X;  3N6R A;  1DZO A;  4LW9 A;  3SOK A;  1AY2 A;  1T92 A;  2M7G A;  3FU1 A;  1QVE A; 
#chains in the Genus database with same CATH homology
 1HPW A;  1X6Y A;  3U9T A;  2PIL A;  3JZZ A;  3SOJ A;  1RG0 A;  1X6R A;  2PY0 A;  1X6P A;  4V1J A;  3G20 A;  2HI2 A;  2M3K A;  3JYZ A;  1X6Z A;  3GN9 A;  3U9S A;  1OQW A;  2KEP A;  1X6Q A;  5JW8 A;  1X6X X;  3N6R A;  1DZO A;  4LW9 A;  3SOK A;  1AY2 A;  1T92 A;  2M7G A;  3FU1 A;  1QVE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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