3JYZA

Crystal structure of pseudomonas aeruginosa (strain: pa110594) typeiv pilin in space group p41212
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
150
structure length
150
Chain Sequence
GIDPFTVRTRVSEGLVLAEPAKLMISTDGSASTADLTRATTTWNQQSNNLGASSKYVTSVLMDAGNTGVITITYVADQVGLPTAGNTLILSPYINDGNTRTALATAVAAGTRGTIDWACTSASNATATAQGFTGMAAGSVPQEFAPAQCR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural characterization of Novel Pseudomonas aeruginosa type IV pilins.
pubmed doi rcsb
molecule tags Structural protein
source organism Pseudomonas aeruginosa
molecule keywords Type IV pilin structural subunit
total genus 41
structure length 150
sequence length 150
ec nomenclature
pdb deposition date 2009-09-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00114 Pilin Pilin (bacterial filament)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.700.10 Alpha Beta 2-Layer Sandwich Glycoprotein, Type 4 Pilin Glycoprotein, Type 4 Pilin 3jyzA00
1X6QA 1QVEA 3SOJA 2M7GA 1AY2A 3G20A 3JZZA 1OQWA 1HPWA 5JW8A 2KEPA 1X6RA 2PILA 2PY0A 2HI2A 1X6XX 3JYZA 1X6PA 1X6ZA 4V1JA 3SOKA 1T92A 3FU1A 1X6YA 3GN9A 1RG0A 4LW9A 1DZOA
chains in the Genus database with same CATH superfamily
1WSCA 1X6QA 1QVEA 3SOJA 2M7GA 1AY2A 3G20A 3U9TA 3JZZA 1OQWA 1HPWA 5JW8A 2KEPA 1X6RA 2PILA 2HI2A 2PY0A 3U9SA 1X6XX 3JYZA 1X6PA 2M3KA 1X6ZA 4V1JA 3SOKA 3N6RA 1T92A 3FU1A 1X6YA 3GN9A 1VAJA 1RG0A 4LW9A 1DZOA 1ZQ7A
chains in the Genus database with same CATH topology
1X6QA 1QVEA 3SOJA 2M7GA 1AY2A 3G20A 3U9TA 3JZZA 1OQWA 1HPWA 5JW8A 2KEPA 1X6RA 2PILA 2PY0A 2HI2A 3U9SA 1X6XX 3JYZA 1X6PA 2M3KA 1X6ZA 4V1JA 3SOKA 3N6RA 1T92A 3FU1A 1X6YA 3GN9A 1RG0A 4LW9A 1DZOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X6Q A;  1QVE A;  3SOJ A;  2M7G A;  1AY2 A;  3G20 A;  3JZZ A;  1OQW A;  1HPW A;  5JW8 A;  2KEP A;  1X6R A;  2PIL A;  2PY0 A;  2HI2 A;  1X6X X;  3JYZ A;  1X6P A;  1X6Z A;  4V1J A;  3SOK A;  1T92 A;  3FU1 A;  1X6Y A;  3GN9 A;  1RG0 A;  4LW9 A;  1DZO A; 
#chains in the Genus database with same CATH topology
 1WSC A;  1X6Q A;  1QVE A;  3SOJ A;  2M7G A;  1AY2 A;  3G20 A;  3U9T A;  3JZZ A;  1OQW A;  1HPW A;  5JW8 A;  2KEP A;  1X6R A;  2PIL A;  2HI2 A;  2PY0 A;  3U9S A;  1X6X X;  3JYZ A;  1X6P A;  2M3K A;  1X6Z A;  4V1J A;  3SOK A;  3N6R A;  1T92 A;  3FU1 A;  1X6Y A;  3GN9 A;  1VAJ A;  1RG0 A;  4LW9 A;  1DZO A;  1ZQ7 A; 
#chains in the Genus database with same CATH homology
 1X6Q A;  1QVE A;  3SOJ A;  2M7G A;  1AY2 A;  3G20 A;  3U9T A;  3JZZ A;  1OQW A;  1HPW A;  5JW8 A;  2KEP A;  1X6R A;  2PIL A;  2PY0 A;  2HI2 A;  3U9S A;  1X6X X;  3JYZ A;  1X6P A;  2M3K A;  1X6Z A;  4V1J A;  3SOK A;  3N6R A;  1T92 A;  3FU1 A;  1X6Y A;  3GN9 A;  1RG0 A;  4LW9 A;  1DZO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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