3JYZA

Crystal structure of pseudomonas aeruginosa (strain: pa110594) typeiv pilin in space group p41212
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
150
structure length
150
Chain Sequence
GIDPFTVRTRVSEGLVLAEPAKLMISTDGSASTADLTRATTTWNQQSNNLGASSKYVTSVLMDAGNTGVITITYVADQVGLPTAGNTLILSPYINDGNTRTALATAVAAGTRGTIDWACTSASNATATAQGFTGMAAGSVPQEFAPAQCR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural characterization of Novel Pseudomonas aeruginosa type IV pilins.
pubmed doi rcsb
molecule tags Structural protein
source organism Pseudomonas aeruginosa
molecule keywords Type IV pilin structural subunit
total genus 41
structure length 150
sequence length 150
ec nomenclature
pdb deposition date 2009-09-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00114 Pilin Pilin (bacterial filament)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.700.10 Alpha Beta 2-Layer Sandwich Glycoprotein, Type 4 Pilin Glycoprotein, Type 4 Pilin 3jyzA00
3JYZA 3FU1A 1AY2A 2PILA 1HPWA 1X6XX 3G20A 1DZOA 1OQWA 4LW9A 3GN9A 1X6QA 1X6PA 2HI2A 3JZZA 5JW8A 3SOJA 1T92A 1RG0A 1X6RA 4V1JA 1X6ZA 2M7GA 3SOKA 2KEPA 1X6YA 2PY0A 1QVEA
chains in the Genus database with same CATH superfamily
3JYZA 3FU1A 1AY2A 2PILA 1HPWA 1X6XX 3U9SA 3G20A 1DZOA 1OQWA 3U9TA 4LW9A 1ZQ7A 3GN9A 1VAJA 1X6QA 3N6RA 1WSCA 1X6PA 2HI2A 3JZZA 5JW8A 3SOJA 1T92A 1RG0A 1X6RA 4V1JA 1X6ZA 2M7GA 3SOKA 2KEPA 1X6YA 2PY0A 1QVEA 2M3KA
chains in the Genus database with same CATH topology
3JYZA 3FU1A 1AY2A 2PILA 1HPWA 1X6XX 3U9SA 3G20A 1DZOA 1OQWA 3U9TA 4LW9A 3GN9A 1X6QA 3N6RA 1X6PA 2HI2A 3JZZA 5JW8A 3SOJA 1T92A 1RG0A 1X6RA 4V1JA 1X6ZA 2M7GA 3SOKA 2KEPA 1X6YA 2PY0A 1QVEA 2M3KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JYZ A;  3FU1 A;  1AY2 A;  2PIL A;  1HPW A;  1X6X X;  3G20 A;  1DZO A;  1OQW A;  4LW9 A;  3GN9 A;  1X6Q A;  1X6P A;  2HI2 A;  3JZZ A;  5JW8 A;  3SOJ A;  1T92 A;  1RG0 A;  1X6R A;  4V1J A;  1X6Z A;  2M7G A;  3SOK A;  2KEP A;  1X6Y A;  2PY0 A;  1QVE A; 
#chains in the Genus database with same CATH topology
 3JYZ A;  3FU1 A;  1AY2 A;  2PIL A;  1HPW A;  1X6X X;  3U9S A;  3G20 A;  1DZO A;  1OQW A;  3U9T A;  4LW9 A;  1ZQ7 A;  3GN9 A;  1VAJ A;  1X6Q A;  3N6R A;  1WSC A;  1X6P A;  2HI2 A;  3JZZ A;  5JW8 A;  3SOJ A;  1T92 A;  1RG0 A;  1X6R A;  4V1J A;  1X6Z A;  2M7G A;  3SOK A;  2KEP A;  1X6Y A;  2PY0 A;  1QVE A;  2M3K A; 
#chains in the Genus database with same CATH homology
 3JYZ A;  3FU1 A;  1AY2 A;  2PIL A;  1HPW A;  1X6X X;  3U9S A;  3G20 A;  1DZO A;  1OQW A;  3U9T A;  4LW9 A;  3GN9 A;  1X6Q A;  3N6R A;  1X6P A;  2HI2 A;  3JZZ A;  5JW8 A;  3SOJ A;  1T92 A;  1RG0 A;  1X6R A;  4V1J A;  1X6Z A;  2M7G A;  3SOK A;  2KEP A;  1X6Y A;  2PY0 A;  1QVE A;  2M3K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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