3LFG | Genus

Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	26
sequence length	88
structure length	88
Chain Sequence	MKEVTIEIKNKTGLHARPAALFVQTASKFSSQIWVEKDNKKVNAKSIMGIMSLGVSQGNVVKLSAEGDDEEEAIKALVDLIESKFGEE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 88 atoms

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88 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Thermoanaerobacter tengcongensis
publication title	Dimerization of HPr by reversible domain swapping rcsb
molecule keywords	Phosphotransferase system, HPr-related proteins
total genus	26
structure length	88
sequence length	88
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2010-01-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00381	PTS-HPr	PTS HPr component phosphorylation site

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1340.10	Alpha Beta	2-Layer Sandwich	Histidine-containing Protein; Chain: A;	HPr-like	3lfgA00

3OQND 1MU4A 1HDNA 1GGRB 3CCDA 1QFRA 1MO1A 1Y4YA 2LRLD 2HIDA 1PTFA 1QR5A 2LRKD 3LNWA 2NZUL 1RZRL 1KKMH 1PFHA 2AK7A 1JEMA 2OENL 3LE1A 1J6TB 1OPDA 1Y51A 3OQMD 3OQOD 1MO1B 2XDFC 1Y50A 1K1CA 3EZEB 3IHSA 1CM2A 1ZVVJ 5T17A 1FU0A 4XWJB 1KA5A 1TXEA 1CM3A 1VRCC 3LE5A 3LFGA 2RLZA 1KKLH 2FEPS 2NZVL 3LE3A 2HPRA 5T1NA 3EZBB 3EZAB 1SPHA 5T1OA 1PCHA 2JELP 1POHA
chains in the Genus database with same CATH superfamily

3OQND 1MU4A 1HDNA 1GGRB 3CCDA 1QFRA 1MO1A 1Y4YA 2LRLD 2HIDA 1PTFA 1QR5A 2LRKD 3LNWA 2NZUL 1RZRL 1J5YA 1KKMH 1PFHA 2AK7A 1JEMA 2OENL 3LE1A 1J6TB 1OPDA 1Y51A 3OQMD 3OQOD 1MO1B 2XDFC 1Y50A 1K1CA 3EZEB 3IHSA 1CM2A 1ZVVJ 5T17A 1FU0A 4XWJB 1KA5A 1TXEA 1CM3A 1VRCC 3LE5A 3LFGA 2RLZA 1KKLH 2FEPS 2NZVL 3LE3A 2HPRA 5T1NA 3EZBB 3EZAB 1SPHA 5T1OA 1PCHA 2JELP 1POHA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3OQN D;  1MU4 A;  1HDN A;  1GGR B;  3CCD A;  1QFR A;  1MO1 A;  1Y4Y A;  2LRL D;  2HID A;  1PTF A;  1QR5 A;  2LRK D;  3LNW A;  2NZU L;  1RZR L;  1KKM H;  1PFH A;  2AK7 A;  1JEM A;  2OEN L;  3LE1 A;  1J6T B;  1OPD A;  1Y51 A;  3OQM D;  3OQO D;  1MO1 B;  2XDF C;  1Y50 A;  1K1C A;  3EZE B;  3IHS A;  1CM2 A;  1ZVV J;  5T17 A;  1FU0 A;  4XWJ B;  1KA5 A;  1TXE A;  1CM3 A;  1VRC C;  3LE5 A;  3LFG A;  2RLZ A;  1KKL H;  2FEP S;  2NZV L;  3LE3 A;  2HPR A;  5T1N A;  3EZB B;  3EZA B;  1SPH A;  5T1O A;  1PCH A;  2JEL P;  1POH A; 
#chains in the Genus database with same CATH topology
 3OQN D;  1MU4 A;  1HDN A;  1GGR B;  3CCD A;  1QFR A;  1MO1 A;  1Y4Y A;  2LRL D;  2HID A;  1PTF A;  1QR5 A;  2LRK D;  3LNW A;  2NZU L;  1RZR L;  1J5Y A;  1KKM H;  1PFH A;  2AK7 A;  1JEM A;  2OEN L;  3LE1 A;  1J6T B;  1OPD A;  1Y51 A;  3OQM D;  3OQO D;  1MO1 B;  2XDF C;  1Y50 A;  1K1C A;  3EZE B;  3IHS A;  1CM2 A;  1ZVV J;  5T17 A;  1FU0 A;  4XWJ B;  1KA5 A;  1TXE A;  1CM3 A;  1VRC C;  3LE5 A;  3LFG A;  2RLZ A;  1KKL H;  2FEP S;  2NZV L;  3LE3 A;  2HPR A;  5T1N A;  3EZB B;  3EZA B;  1SPH A;  5T1O A;  1PCH A;  2JEL P;  1POH A; 
#chains in the Genus database with same CATH homology
 3OQN D;  1MU4 A;  1HDN A;  1GGR B;  3CCD A;  1QFR A;  1MO1 A;  1Y4Y A;  2LRL D;  2HID A;  1PTF A;  1QR5 A;  2LRK D;  3LNW A;  2NZU L;  1RZR L;  1KKM H;  1PFH A;  2AK7 A;  1JEM A;  2OEN L;  3LE1 A;  1J6T B;  1OPD A;  1Y51 A;  3OQM D;  3OQO D;  1MO1 B;  2XDF C;  1Y50 A;  1K1C A;  3EZE B;  3IHS A;  1CM2 A;  1ZVV J;  5T17 A;  1FU0 A;  4XWJ B;  1KA5 A;  1TXE A;  1CM3 A;  1VRC C;  3LE5 A;  3LFG A;  2RLZ A;  1KKL H;  2FEP S;  2NZV L;  3LE3 A;  2HPR A;  5T1N A;  3EZB B;  3EZA B;  1SPH A;  5T1O A;  1PCH A;  2JEL P;  1POH A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3LFGA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations