4I70A

Crystal structure of the trypanosoma brucei inosine-adenosine-guanosine nucleoside hydrolase
Total Genus 123

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
123
sequence length
327
structure length
316
Chain Sequence
MAKTVILDHDGNKDDFVAMILLLSNPKKVNLIGCICTDADCFVENGFDVTGKIMCAMHRLIKTPLFPIGKSTATAVNAFPTEWRFSAKNLDDMPFLNIVEDVALWEKLKPENEAHNGQQLLADLVMKSKEKVTVCVTGPLSNMAWCIEKYGEAFTSKVEECVIMGGAVDVGGNVFLPTTDGSAEWNIYWDPPAAKKVLCCPNIRCVLFSLDATNTVPVRSVDVKGFGAQNQYLLSQMVGTMWAMAYYAWDALTAAYILEPTIATLEPVALDVDVSKGKSEGRTPRASGEGKPCVHVARNPSKQMFHDLVFASTRVC
5010015020025030030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (3-9)TI1 (25-28)O1 (199-304)AH6 (140-156)AH2 (43-61)AH1 (13-24)AH11 (233-244)S2 (29-36)EMPTYTIV1 (38-41)S3 (68-70)AH3 (85-92)3H2 (94-96)AH4 (99-114)AH5 (117-127)TVIII2 (128-131)S4 (132-136)AH8 (191-199)S5 (158-164)AH7 (185-189)S6 (205-208)AH9 (210-214)TI3 (176-179)S7 (274-279)TI4 (200-203)TI6 (270-273)TIV3 (214-217)3H3 (224-229)S8 (305-311)AH13 (313-324)AH12 (261-269)TII1 (290-293)TVIII1 (75-78)TIV2 (167-170)AH10 (220-223)TI5 (229-232)3H1 (81-83)Updating...
connected with : NaN
publication title Structures of purine nucleosidase from Trypanosoma brucei bound to isozyme-specific trypanocidals and a novel metalorganic inhibitor
pubmed doi rcsb
molecule keywords Inosine-adenosine-guanosine-nucleoside hydrolase
molecule tags Hydrolase
source organism Trypanosoma brucei brucei
total genus 123
structure length 316
sequence length 327
ec nomenclature ec 3.2.2.1: Purine nucleosidase.
pdb deposition date 2012-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01156 IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.245.10 Alpha Beta Alpha-Beta Complex Inosine-uridine Nucleoside N-ribohydrolase; Chain A Ribonucleoside hydrolase-like 4i70A00
4KPNA 5TSQA 1KIEA 3EPWA 3MKMA 3T8IA 3T8JA 4WR2A 1YOEA 4KL0A 2FF2A 1KICA 4I75A 2YHGA 3MKNA 4KPOA 1MASA 3B9GA 1Q8FA 2C40A 3EPXA 4I72A 1HP0A 4I73A 1R4FA 3G5IA 1HOZA 3FZ0A 4I71A 3B9XA 1EZRA 2FF1A 4I74A 4P5FA 2MASA 4I70A
chains in the Genus database with same CATH superfamily
4KPNA 5TSQA 1KIEA 3EPWA 3MKMA 3T8IA 3T8JA 4WR2A 1YOEA 4KL0A 2FF2A 1KICA 4I75A 2YHGA 3MKNA 4KPOA 1MASA 3B9GA 1Q8FA 2C40A 3EPXA 4I72A 1HP0A 4I73A 1R4FA 3G5IA 1HOZA 3FZ0A 4I71A 3B9XA 1EZRA 2FF1A 4I74A 4P5FA 2MASA 4I70A
chains in the Genus database with same CATH topology
4KPNA 5TSQA 1KIEA 3EPWA 3MKMA 3T8IA 3T8JA 4WR2A 1YOEA 4KL0A 2FF2A 1KICA 4I75A 2YHGA 3MKNA 4KPOA 1MASA 3B9GA 1Q8FA 2C40A 3EPXA 4I72A 1HP0A 4I73A 1R4FA 3G5IA 1HOZA 3FZ0A 4I71A 3B9XA 1EZRA 2FF1A 4I74A 4P5FA 2MASA 4I70A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KPN A;  5TSQ A;  1KIE A;  3EPW A;  3MKM A;  3T8I A;  3T8J A;  4WR2 A;  1YOE A;  4KL0 A;  2FF2 A;  1KIC A;  4I75 A;  2YHG A;  3MKN A;  4KPO A;  1MAS A;  3B9G A;  1Q8F A;  2C40 A;  3EPX A;  4I72 A;  1HP0 A;  4I73 A;  1R4F A;  3G5I A;  1HOZ A;  3FZ0 A;  4I71 A;  3B9X A;  1EZR A;  2FF1 A;  4I74 A;  4P5F A;  2MAS A;  4I70 A; 
#chains in the Genus database with same CATH topology
 4KPN A;  5TSQ A;  1KIE A;  3EPW A;  3MKM A;  3T8I A;  3T8J A;  4WR2 A;  1YOE A;  4KL0 A;  2FF2 A;  1KIC A;  4I75 A;  2YHG A;  3MKN A;  4KPO A;  1MAS A;  3B9G A;  1Q8F A;  2C40 A;  3EPX A;  4I72 A;  1HP0 A;  4I73 A;  1R4F A;  3G5I A;  1HOZ A;  3FZ0 A;  4I71 A;  3B9X A;  1EZR A;  2FF1 A;  4I74 A;  4P5F A;  2MAS A;  4I70 A; 
#chains in the Genus database with same CATH homology
 4KPN A;  5TSQ A;  1KIE A;  3EPW A;  3MKM A;  3T8I A;  3T8J A;  4WR2 A;  1YOE A;  4KL0 A;  2FF2 A;  1KIC A;  4I75 A;  2YHG A;  3MKN A;  4KPO A;  1MAS A;  3B9G A;  1Q8F A;  2C40 A;  3EPX A;  4I72 A;  1HP0 A;  4I73 A;  1R4F A;  3G5I A;  1HOZ A;  3FZ0 A;  4I71 A;  3B9X A;  1EZR A;  2FF1 A;  4I74 A;  4P5F A;  2MAS A;  4I70 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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