4KL0A

Crystal structure of the effector protein xoo4466
Total Genus 122

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
sequence length
368
structure length
350
Chain Sequence
VLTPTEAAVLRELRLHRPQLPLDTLLFTDPNKDPDDVVTYTIAKQLQADGFLRLTDVVVTLGDADMRSQRAQLAKGVFDRLALPDVRVARGQDYPMTSTQAREHSKFLAEGAALRAAPDAVHTDGVRAMCERLATSPHKLGMVVIAGMTDASALLAEAGDLVREKVASITIMGGIDPARLVQPDTRAYNNATDIHAARALYRRAQQLGIPLRILTKEAAYKAAVPPAFYEGIARNGHPVGEYLRDVQKNALKGLWEGIQANLIPGLDTAWFFRTFVALSFDAIWPQVTKLNLYDPLTLLAALPGTARLLFQPTPMHREGASPVEHVGHAEVVRPEKARLLLSALAKAALV
5010015020025030030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (109-115)TVIII1 (105-108)AH6 (235-252)TIV1 (117-120)AH2 (121-136)TI1 (170-173)AH4 (185-191)S3 (174-177)3H1 (196-201)3H2 (205-207)AH10 (317-324)AH5 (213-222)AH11 (329-351)S4 (227-231)S5 (253-259)TI2 (275-278)S6 (262-263)TIV3 (266-273)AH8 (285-298)S7 (273-274)AH7 (279-283)S8 (302-305)AH9 (307-313)TI3 (324-327)AH1 (91-102)AH3 (151-168)S2 (139-146)Updating...
connected with : NaN
publication title Crystal structure of the effector protein XOO4466 from Xanthomonas oryzae
pubmed doi rcsb
molecule keywords Putative uncharacterized protein
molecule tags Calcium binding protein
source organism Xanthomonas oryzae pv. oryzae
total genus 122
structure length 350
sequence length 368
ec nomenclature
pdb deposition date 2013-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01156 IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.245.10 Alpha Beta Alpha-Beta Complex Inosine-uridine Nucleoside N-ribohydrolase; Chain A Ribonucleoside hydrolase-like 4kl0A00
3MKMA 4I72A 4I71A 4KL0A 1MASA 4I73A 3T8IA 3EPXA 2FF2A 4KPOA 3MKNA 3T8JA 4I70A 3B9XA 1YOEA 1Q8FA 4I74A 1KIEA 1HOZA 1KICA 3FZ0A 4I75A 2MASA 2YHGA 4KPNA 1EZRA 3G5IA 3B9GA 5TSQA 4WR2A 1R4FA 2FF1A 4P5FA 1HP0A 2C40A 3EPWA
chains in the Genus database with same CATH superfamily
3MKMA 4I72A 4I71A 4KL0A 1MASA 4I73A 3T8IA 3EPXA 2FF2A 4KPOA 3MKNA 3T8JA 4I70A 3B9XA 1YOEA 1Q8FA 4I74A 1KIEA 1HOZA 1KICA 3FZ0A 4I75A 2MASA 2YHGA 4KPNA 1EZRA 3G5IA 3B9GA 5TSQA 4WR2A 1R4FA 2FF1A 4P5FA 1HP0A 2C40A 3EPWA
chains in the Genus database with same CATH topology
3MKMA 4I72A 4I71A 4KL0A 1MASA 4I73A 3T8IA 3EPXA 2FF2A 4KPOA 3MKNA 3T8JA 4I70A 3B9XA 1YOEA 1Q8FA 4I74A 1KIEA 1HOZA 1KICA 3FZ0A 4I75A 2MASA 2YHGA 4KPNA 1EZRA 3G5IA 3B9GA 5TSQA 4WR2A 1R4FA 2FF1A 4P5FA 1HP0A 2C40A 3EPWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MKM A;  4I72 A;  4I71 A;  4KL0 A;  1MAS A;  4I73 A;  3T8I A;  3EPX A;  2FF2 A;  4KPO A;  3MKN A;  3T8J A;  4I70 A;  3B9X A;  1YOE A;  1Q8F A;  4I74 A;  1KIE A;  1HOZ A;  1KIC A;  3FZ0 A;  4I75 A;  2MAS A;  2YHG A;  4KPN A;  1EZR A;  3G5I A;  3B9G A;  5TSQ A;  4WR2 A;  1R4F A;  2FF1 A;  4P5F A;  1HP0 A;  2C40 A;  3EPW A; 
#chains in the Genus database with same CATH topology
 3MKM A;  4I72 A;  4I71 A;  4KL0 A;  1MAS A;  4I73 A;  3T8I A;  3EPX A;  2FF2 A;  4KPO A;  3MKN A;  3T8J A;  4I70 A;  3B9X A;  1YOE A;  1Q8F A;  4I74 A;  1KIE A;  1HOZ A;  1KIC A;  3FZ0 A;  4I75 A;  2MAS A;  2YHG A;  4KPN A;  1EZR A;  3G5I A;  3B9G A;  5TSQ A;  4WR2 A;  1R4F A;  2FF1 A;  4P5F A;  1HP0 A;  2C40 A;  3EPW A; 
#chains in the Genus database with same CATH homology
 3MKM A;  4I72 A;  4I71 A;  4KL0 A;  1MAS A;  4I73 A;  3T8I A;  3EPX A;  2FF2 A;  4KPO A;  3MKN A;  3T8J A;  4I70 A;  3B9X A;  1YOE A;  1Q8F A;  4I74 A;  1KIE A;  1HOZ A;  1KIC A;  3FZ0 A;  4I75 A;  2MAS A;  2YHG A;  4KPN A;  1EZR A;  3G5I A;  3B9G A;  5TSQ A;  4WR2 A;  1R4F A;  2FF1 A;  4P5F A;  1HP0 A;  2C40 A;  3EPW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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